DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG7737 and LDL1

DIOPT Version :10

Sequence 1:NP_001286308.1 Gene:CG7737 / 36174 FlyBaseID:FBgn0033584 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_176471.1 Gene:LDL1 / 842582 AraportID:AT1G62830 Length:844 Species:Arabidopsis thaliana


Alignment Length:519 Identity:147/519 - (28%)
Similarity:210/519 - (40%) Gaps:121/519 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 IVVIGAGASGVACATKLLELGFQNVLVVEAEDRLGGRIHT--IPFADNV---IDLGAQWCHGERD 105
            :||:|||.:|:..|.:||.:||: |||:|..||.|||:.|  :...|.|   .|:|.....|...
plant   268 VVVVGAGLAGLVAARQLLSMGFR-VLVLEGRDRPGGRVKTRKMKGGDGVEAMADVGGSVLTGING 331

  Fly   106 NIVYELTRKQDEEL--LESTGPVYENYECVRSNGDVVPEEVSSRLKAIVGDSLVTRQLELRHCSG 168
            |.:..|.|:....|  :....|:|      ..||::....|.|:::|.. :.|:.|..:||.   
plant   332 NPLGVLARQLGLPLHKVRDICPLY------LPNGELADASVDSKIEASF-NKLLDRVCKLRQ--- 386

  Fly   169 SLGSYLTNKFYDTLRRPENSDID---AEVASEFFVNYQKFENSVE-------------ASDTLEQ 217
               |.:          .||..:|   .|....|.:.|...|:..|             |:.||  
plant   387 ---SMI----------EENKSVDVPLGEALETFRLVYGVAEDQQERMLLDWHLANLEYANATL-- 436

  Fly   218 VSGRGYLDYW------ECEGDILLNWKDKGYVELLRLLMRSRELNVEHGVLEQ-RLLLGTRVVKI 275
             .|...:.||      |..||..             .:....|:.| |.:.|. .:..|:.|..|
plant   437 -LGNLSMAYWDQDDPYEMGGDHC-------------FIPGGNEIFV-HALAENLPIFYGSTVESI 486

  Fly   276 NWNRNDGRVELQMSNGE-TCIADHVVVTVSLGVLKDQHLRLFEPQLPVEKQRAIDGLAFGTVNKI 339
            .:..|.  |.:...|.| .|  |..:.||.|||||...:. |.|:||.:|:.||..|.||.:||:
plant   487 RYGSNG--VLVYTGNKEFHC--DMALCTVPLGVLKKGSIE-FYPELPHKKKEAIQRLGFGLLNKV 546

  Fly   340 FVEFPEAFWPEDWTGFTMLWRDEDLDDIRGTSRAWLEDVFGFY---RVSYQPRILAGWITNESGR 401
            .:.||..||.|:...|..|..|   ...||       :.|.||   .||..| :|...:..::..
plant   547 AMLFPCNFWGEEIDTFGRLTED---PSTRG-------EFFLFYSYSSVSGGP-LLVALVAGDAAE 600

  Fly   402 HMETL-PVDEVQAGVMYLFRRFLRWK---IPDPANFRTSAWYTNDNFRGSYSYRSMDTEQLGTGA 462
            ..||| |.|.|:. |:.:.|.....|   :|||.....|.|..:....|||||            
plant   601 RFETLSPTDSVKR-VLQILRGIYHPKGIVVPDPVQALCSRWGQDKFSYGSYSY------------ 652

  Fly   463 RELSHPLTVVATTPEKDKDSEDEAWQQSRCDRPIVQFAGEASSEHYYSTVHGAVEAGWREARRL 526
                    |...:...|.|...|:....|     |.|||||::..|.:|:|||..:|.|||..:
plant   653 --------VAVGSSGDDYDILAESVGDGR-----VFFAGEATNRQYPATMHGAFLSGMREAANI 703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG7737NP_001286308.1 Amino_oxidase 54..526 CDD:396255 142/509 (28%)
LDL1NP_176471.1 PLN02328 1..844 CDD:215187 147/519 (28%)

Return to query results.
Submit another query.