DRSC/TRiP Functional Genomics Resources

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Protein Alignment shn and LOC568037

DIOPT Version :9

Sequence 1:NP_001260883.1 Gene:shn / 36171 FlyBaseID:FBgn0003396 Length:2587 Species:Drosophila melanogaster
Sequence 2:XP_009290777.1 Gene:LOC568037 / 568037 -ID:- Length:1974 Species:Danio rerio


Alignment Length:2331 Identity:486/2331 - (20%)
Similarity:790/2331 - (33%) Gaps:741/2331 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   362 QQQSHQQVQQQQQQQQTPPPSVAI---------HEFSANFVNSNHVNAIGHEESIISNSGYKAAG 417
            :.:..|....:|..||..|.|.::         .:.::..|:.:| ..:.|.:........:...
Zfish     2 EAEEKQSADGEQSGQQPQPSSKSLLAAQLPQLQQQATSQSVHGSH-GRLQHRQPKRCEMLQRQKQ 65

  Fly   418 RTRTPLANSNSNTNSTSN-SNSNHAANATLSPASFAQHQQLTQPTT-VSPGIPGGAAAPNPAC-- 478
            |.::..:.|:...:.... |..:.:|....||.|...||..:.|.. |..|.|         |  
Zfish    66 RHQSQASGSSWQLSEIPGPSRGSCSALGDPSPQSHNVHQTQSMPNVEVQEGTP---------CRQ 121

  Fly   479 ----EKSGRYVCQYCNLICAKPSVLEKHIRAHTNERPYPCDTCGIAFKTKSNLYKHCRSRSHAAR 539
                :|.|:|||.||...|||||||:||||:||.||||||..||.:||||||||||.:|.:|..:
Zfish   122 ERKPQKPGKYVCTYCGRPCAKPSVLQKHIRSHTGERPYPCVPCGFSFKTKSNLYKHRKSHAHRIK 186

  Fly   540 ARGLEVPADADDGLSDQDAELSNSSSELPSRAGSPYEEPINSPTPSPSTLSAAKSAYIQQPPLPT 604
            |           |::....|.|....|     |:...|.....|...||.|..::.         
Zfish   187 A-----------GMASSREETSFIGPE-----GAVLGEEQEEGTEGESTGSEDETG--------- 226

  Fly   605 YMQQLPLGSPAAGTLPPTTADNHHSATAQHRQSIDYKPYKPKFHNASLYSCSSKELQQQQQQLQI 669
                                 .|..:|:|.|.::                  .|..:.:...::.
Zfish   227 ---------------------QHQPSTSQGRPTL------------------KKSCKVELSFIEE 252

  Fly   670 QQQQQQHQLAQQKLSIQLPLVQQPSLAHPTLSPSTQMKMKHHINSHQIQLQLQQQQSLLAQQSLL 734
            ..|.:..|..:|:|:::|   .:...|..|.|..|:                             
Zfish   253 GPQTEDSQAVKQRLAMRL---SERKRAPRTSSDDTR----------------------------- 285

  Fly   735 AAMPPGGVYYLG--QPSYYNQDTAAAIHQ----HALAIQQFQIHLAQQQQQQQQQHPPLVKATPP 793
            :::.||.   .|  :..|::...:|.:.|    :|.|....:|.|.:..:..|||.         
Zfish   286 SSLGPGS---KGSTESGYFSSSGSAELSQVSPPNASAKTYAEIILGKYGRLGQQQR--------- 338

  Fly   794 MQQPPSLPPQQLVRANSQISSVATAPATPTPAANLSTFASSSGGKQVNV------AKVQEHISKL 852
                  :|.|||     |:||                  ||||.::.::      .:|.|||:||
Zfish   339 ------IPHQQL-----QLSS------------------SSSGQQEKSIPFTVPKTQVIEHITKL 374

  Fly   853 ISQNEAIVENKEILLQKKYPKQLSRSRSFNNANSNNASQH-------------GSNASALHANNS 904
            |:.|||:|:..||...|.....|||..|..:...::..:|             ||....:..:.:
Zfish   375 ITINEAVVDTSEIDSVKPRRSSLSRRSSIESVKFSSPKEHCVFEPKAEAPGSCGSAVQLISGSFA 439

  Fly   905 QNNTNAQMPERETKVNLAQAIFQKQQHQLQQQQQQQITQQQQQQLEQQNYYTYIQQQQECQQQQL 969
            ...|.:.:.|.|.....:.:.|..:...:....:...|.....:|.    :::..||....:.::
Zfish   440 GELTGSYLTEAEKLAGQSSSAFLYRSQSVPSSGKSSDTTSHSFRLS----HSFDDQQAIAAEMRI 500

  Fly   970 EPPNGVVKRNAYKPGVVMTTPVKQQ---QQLPPPPSPL------------------PMQTMQYRQ 1013
            .|...:::|   :|.:.|  ||..:   :...|..|.|                  .|.....:.
Zfish   501 GPHQRMLRR---QPAIEM--PVGAELIIEDAGPSSSSLKKTEPGIKREREIFLYECEMCGSHLKN 560

  Fly  1014 DPATPVTKI------------EQPTTAVPVMPLNLSAKPKPTLVTVPVSSLSTSSLAPTPTTSTN 1066
            ..:....::            |:.:..:...|..:|.|.|...:.|........||...| .|..
Zfish   561 QDSFAAHRLACMSKSLHSFQSEEGSALIENQPQIMSYKFKAMAMAVRKRKKKEESLEEDP-PSPG 624

  Fly  1067 PTSSSKTAPPPAQVNNSIIKNLLLNARGLAVPIGEGDDAVYSCPICASEFR---SADDLKLHNST 1128
            ||:.|..:.|                  |::| |..|:...||.:..||..   |..::.:...|
Zfish   625 PTAVSFCSKP------------------LSMP-GCSDNQGASCGLSPSELERRGSCKEISVIQHT 670

  Fly  1129 YCQDASSSAPMS---------------PASSPFRSNSISLSLPEL------KSHMANSKNPLSLA 1172
            ...:...|.||:               |.|:.......::.:||:      .|.|.:.....||.
Zfish   671 RSFEKQESIPMTNQEEEPEHEPSQEPKPTSTSRLIRQSNIQVPEILVTEEPDSEMLSQPVSTSLE 735

  Fly  1173 KLAWSQLKTKRSSLVLSRLSAAQTPARTSTVTAPTVTASAPAPAVATVTAPSSAPAPQ------- 1230
            .....:.:..:.|..||:|.|.:.|.:...:.....|.|:...:..:|:.|.| |:.:       
Zfish   736 SEKVEEFQWPQRSQSLSQLPAEKLPPKKKRLRLAEATQSSGESSFESVSLPHS-PSQESNVSHAS 799

  Fly  1231 IEALRFVDAPLPSPGPLLGKTPLVDYAQQSTPRKAQDSVVITKMHEDRQFVIEAQPAKRIKTSDL 1295
            ..:..|.:...|            |...||..|.:|.|.::|......|: .::|...|..||:.
Zfish   800 SRSASFEEMGRP------------DSEMQSATRSSQVSHMLTVPSSVYQY-HQSQREMRRSTSEQ 851

  Fly  1296 VVASSS-----QQPTSFNFSFNNQNSSNSVPELQSSKEERLRRFTSSGGSM------IPISE--- 1346
            ..||.:     ::..|.:|.:    .|.|:.....:.:||.:......|::      .|.|:   
Zfish   852 ASASPAYPAHVEETRSKSFDY----GSLSLERTSVTWKERRKCLLVKHGTLGEPDHEEPSSKHGF 912

  Fly  1347 ---CPDLDNSPKMIRTPLLSG---GSFQDVSV---------------------KVNNETGSSSKE 1384
               |......|....|....|   ..|...::                     :.|.:..|||:.
Zfish   913 LAVCQSYPAHPPFTITENREGNRTSRFSSENIGKTLQLFHSPLGLPPAVFPIHQANPDFYSSSQL 977

  Fly  1385 RKLMALVSGSGLLGVSSGPQ-------HFQFPPINSITA-------FNPL-TLPPMSGGDKTTPV 1434
            .:.:.:.:|   :.....||       |.:.||:|....       ..|| ||.|:...|....|
Zfish   978 TRFVPVTTG---ISAVISPQMFHQGYLHSETPPVNQRPTEYVERLPLQPLATLFPLQSSDVAQAV 1039

  Fly  1435 TPIPHVPGMPGPGSLTPQMP-------------LLPPP--------------------------- 1459
            .       .|.||.||.|:|             .||.|                           
Zfish  1040 C-------FPMPGGLTIQVPSGPLFREFRSSPSSLPSPVHSQQQLVVRHSPHPVIAPCLQQLVPV 1097

  Fly  1460 -----PQQLQLPIPS----------------------------------------SRGRSPNRKQ 1479
                 |.:||..||:                                        .|..||:.|.
Zfish  1098 VSLVVPVRLQTHIPTYASAMYTTISQILATTQHPICCTAMVIMGKLEEDKIQRSYLRLPSPSPKS 1162

  Fly  1480 ----PSPLLLGGGS------------GELKALSPFGGVQNVPSEFSRQPPTPAQRQALQWNSKEA 1528
                |.||..|.|:            |..:.|||.|.:: :..|..|.     |::..:...||.
Zfish  1163 YIPLPLPLEHGAGTSSDDSYGQLGAGGSKRMLSPAGSLE-LSLEAHRH-----QKRVKEEEEKEE 1221

  Fly  1529 PKKAPFNFLRMADNVKTTEPEVRHFNLENVISGKQQELP--LTPLHVDTPNGNAPEETSPVASAS 1591
            ..|.                     |.:|....|.|||.  .....:...|....::...|....
Zfish  1222 DDKE---------------------NADNKCDEKSQELSQGKNKYRLTVENVGREKDPREVIETE 1265

  Fly  1592 ASAKSKFLRPTSLPLKPGTFTPKRHHGITPTANTLPLISPETPRPSKSCVQLYLNGHAYTYLGLK 1656
            .|:|....:..:..||........|......|:.:.::.|                   :|..|.
Zfish  1266 ESSKQNLHQHKTETLKEEEREEAEHRYAPRVASPVRIVDP-------------------SYPSLH 1311

  Fly  1657 CSTKMFYCTVNCPQPSYVAGMHKLSMYSVWQVCEENQPHPLGFKLKQVMALYDSRQRMLGNGSST 1721
            .:|.:.:|.:|..:|:........|:||.|.|...| |:..|...|.:::|..|:|:......:.
Zfish  1312 TTTSVSWCYLNYTKPNPSTHRDSTSVYSSWSVSMHN-PNIPGLSTKILLSLLRSKQKHSAETYTM 1375

  Fly  1722 AMAGSGKLSYNLVASQQIVSSPSTSSTSSAFYQGPLKTPPTVTIAALSEANVAAKANEEAQAKKL 1786
            |.|....:       .::||:.|..:::|..:..|..||..|.....||:.   ..::|:.....
Zfish  1376 ATAPPPTI-------DKLVSTDSKETSASEVHASPPSTPVKVKEEPTSESR---DKDKESADDMP 1430

  Fly  1787 ETSPSGQPL-----VGGYESHEDYTYIRGRGRGRYVCSECGIRCKKPSMLKKHIRTHTDVRPFTC 1846
            .||...:.:     .|||:|:|||.|:||||||:|||.|||||||||||||||||||||:||:.|
Zfish  1431 ATSTQNEAVRVCIFEGGYKSNEDYVYVRGRGRGKYVCGECGIRCKKPSMLKKHIRTHTDLRPYVC 1495

  Fly  1847 SHCNFSFKTKGNLTKHMQSKTHFKKCIELGIN-PGPMPPDS-----------------EFLDVD- 1892
            .:|||:|||||||||||:||.|.|||:|:|.: ...:.|:.                 :|.||| 
Zfish  1496 KYCNFAFKTKGNLTKHMKSKAHGKKCLEMGASESSELDPEEAGGSDERVCESEDQEGHQFSDVDD 1560

  Fly  1893 ----------MDFDQQSSTSAGGRTSSMAGESD-SDDYSDNESESSDTDESKSRQKEHEAARGLL 1946
                      .||......|:...|.:.....| |:....:::|.||....:.....|....|:.
Zfish  1561 SEVEDDEDEEEDFSSHDEPSSACSTDTRQSTGDLSESGHGSQTEPSDPTAREEYSSPHRPWPGIR 1625

  Fly  1947 SL-------------------------------SMTPPIPQS-----VSPYPQLQDTPLPAASPA 1975
            ::                               |::|.:..|     :||.|:...:|:.|.||.
Zfish  1626 AMSPGGKRASFSRKGWEVSPRNFSPSSEGSPLRSLSPRVELSSPSRHLSPSPERGPSPIRALSPL 1690

  Fly  1976 NSIGSSGSQPKRLVC--------SFTSPKPPFDYQKQEQYYSNP-----EESKPKRSVANEESAP 2027
            ..:     .|.|.|.        :.:||.|   .:.|.:.:|:|     |.|||..:...::...
Zfish  1691 RPL-----SPLRPVSPARYRSARALSSPTP---LKPQHRPHSSPAGLHWEPSKPATNTQKDKPGT 1747

  Fly  2028 MDLTKPRGSILLISPSPVSVPAHDLPKSQAQQMHDVIFGTSGNESGFMKTLISVSDKVRISAEME 2092
            .....|    .|:|||....|....|.:..                   |..:|.          
Zfish  1748 QAAPDP----CLLSPSQRFPPCEPFPPAPV-------------------TPWTVD---------- 1779

  Fly  2093 EQAKHEAEGEDVQLQTYIKEHALHQAKIKQSQFSRSYLINTLYTAASPVMSSSSTLFTANSRPVM 2157
                        ::.:::..|:..||::.....              |:...........||   
Zfish  1780 ------------RMFSHLPLHSQDQARMPYHMI--------------PIGGIQMVQLRPPSR--- 1815

  Fly  2158 SVNEVPSIEVHEVKTPEAIESPRSAPEQAPVILAQIAQEENEEPNIAEPHNANLPAAVQQPDVNE 2222
                 |.:|.....||    ||.|..|.:|..||:     .:.|.|:...::.....:|....::
Zfish  1816 -----PKLERQSSSTP----SPTSPKEDSPFSLAR-----RDYPWISSSESSPQRTKIQDEGASQ 1866

  Fly  2223 FTGVLGNPTAPPTSSV-------------------------TATSVSTTTAAPVAPSST-ANSTQ 2261
                 .:..:|.|||.                         ::::..|.|..|.|...| |:|.:
Zfish  1867 -----SDRFSPSTSSAVPKLLSLKQGIGEQRTAKVRKQYSDSSSTTKTRTFGPEASRKTAADSDE 1926

  Fly  2262 PAQRTVIVGEDGFKSSTPTSKSGDLQHVSYGRGVPPAPIAG--------DARPTCT 2309
            .||| :..||:       .|.||:.:.:........||:.|        ||.|..|
Zfish  1927 GAQR-ISQGEE-------ASSSGESRLLRGTEKPVAAPLRGRGSSAEGSDADPDST 1974

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shnNP_001260883.1 C2H2 Zn finger 486..506 CDD:275368 14/19 (74%)
zf-H2C2_2 499..523 CDD:290200 16/23 (70%)
C2H2 Zn finger 514..536 CDD:275368 14/21 (67%)
zf-C2H2 1816..1838 CDD:278523 20/21 (95%)
C2H2 Zn finger 1818..1838 CDD:275370 18/19 (95%)
zf-H2C2_2 1830..1855 CDD:290200 18/24 (75%)
zf-C2H2 1844..1868 CDD:278523 17/23 (74%)
C2H2 Zn finger 1846..1868 CDD:275370 17/21 (81%)
zf-C2H2 2307..2328 CDD:278523 1/3 (33%)
C2H2 Zn finger 2308..2328 CDD:275368 1/2 (50%)
zf-C2H2_jaz 2333..2359 CDD:288983
C2H2 Zn finger 2336..2358 CDD:275368
C2H2 Zn finger 2381..2403 CDD:275368
LOC568037XP_009290777.1 C2H2 Zn finger 133..153 CDD:275368 14/19 (74%)
zf-H2C2_2 146..170 CDD:290200 16/23 (70%)
C2H2 Zn finger 161..181 CDD:275368 13/19 (68%)
zf-C2H2 1465..1487 CDD:278523 20/21 (95%)
C2H2 Zn finger 1467..1487 CDD:275370 18/19 (95%)
zf-H2C2_2 1479..1504 CDD:290200 18/24 (75%)
C2H2 Zn finger 1495..1513 CDD:275370 14/17 (82%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6359
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25148
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45944
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3898
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
66.090

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