DRSC/TRiP Functional Genomics Resources

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Protein Alignment shn and znf983

DIOPT Version :9

Sequence 1:NP_001260883.1 Gene:shn / 36171 FlyBaseID:FBgn0003396 Length:2587 Species:Drosophila melanogaster
Sequence 2:NP_001121715.1 Gene:znf983 / 560276 ZFINID:ZDB-GENE-060503-812 Length:715 Species:Danio rerio


Alignment Length:826 Identity:163/826 - (19%)
Similarity:242/826 - (29%) Gaps:289/826 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1757 LKTPPTVTIAALSEANVAAKANEEAQAKKLETSPSGQPLVGGYESHEDYTYIRGRGRGRYVCSEC 1821
            :|...|..:..:.|.:.....:||....|.|.....:.        |....::........|::|
Zfish     9 IKQEDTEELIDVKEESEELNEDEEKHQVKSEEKTQSET--------EQSISVKATAVNSLTCTQC 65

  Fly  1822 GIRCKKPSMLKKHIRTHTDVRPFTCSHCNFSFKTKGNLTKHMQSKTHFK--KC------------ 1872
            |....:.|.|..|:|.||..:||.|.||::.|.:..||..|::..|..|  :|            
Zfish    66 GKSFTRKSGLNDHMRIHTGEKPFKCPHCDWRFNSLRNLKSHIRLHTGEKPHQCSHCSKRFNHSGQ 130

  Fly  1873 --IELGINPGPMPPDSEFLDVDMDFDQQSSTSAGGRTSSMAGESDSDDYSDNESESSDTDESKSR 1935
              ..|.|:.|..|           |:           .|..|:..|...:....|...|:|    
Zfish   131 LKSHLRIHTGEKP-----------FE-----------CSHCGKRFSVSKNMKAHERIHTEE---- 169

  Fly  1936 QKEHEAARGLLSLSMTPPIPQSVSPYPQLQDTPLPAASPANSIGSSGSQPKRLVCSFTSPKPPFD 2000
            :..|..|.|:....:                              |..|...|.|...:.|    
Zfish   170 KPYHCTACGMTFSYL------------------------------SSLQKHTLNCQNVTVK---- 200

  Fly  2001 YQKQEQYYSNPEESKP-KRSVANEESAPMDLTKPRGSILLISPSPVSVPAHDLPKSQAQQMHDV- 2063
                       |||:. ...|.:||                             |:|::..|.: 
Zfish   201 -----------EESEELNEDVKSEE-----------------------------KTQSETEHSIS 225

  Fly  2064 IFGTSGNESGFMKTLISVSDKVRISAEMEEQAKHEAE--------GEDVQLQTYIKEH-ALH--- 2116
            :.||:.|.....:...|:|.|..::..|.   .|..|        |:......|:|.| .:|   
Zfish   226 VKGTAVNSWTCTQCGKSLSCKSALNTHMR---IHTGEKPYQCSHCGKRFSNSAYLKSHKRIHTEE 287

  Fly  2117 ---QAKIKQSQFSRSYLINT---LYTAASPV-----------MSSSSTLFTANSRPVMSVNEVPS 2164
               |......:||.|..:.|   .:|...|.           |||..| .|.|...|| |.....
Zfish   288 KPYQCSHCDKRFSFSQNLKTHLRTHTGEKPYHCTACGKSFRHMSSLQT-HTRNHHNVM-VEGSED 350

  Fly  2165 IEVHEV----KTPEAIESPRSAPEQAPVILAQIAQEENEEP-------------NIAEPHNANLP 2212
            .|.|.|    ||....|..:|...:..:|. .:.....|.|             |:.:.|.    
Zfish   351 KEKHHVTSKQKTFNCTECGKSFKRKYHLIF-HLKIHSGENPYKCSHCDKRFRCTNVRKAHE---- 410

  Fly  2213 AAVQQPDVNEFTGVLGNPTAPPTSSVTATSVSTTTAAPVAPSSTANST-------QPAQRTVIVG 2270
                                           ...|...:...|..|.|       :..:|| ..|
Zfish   411 -------------------------------MIHTGEELYKCSHCNKTFRYSGLLKVHERT-HTG 443

  Fly  2271 EDGFKSS----TPTSKSGDLQHVSYGRGVPPAPIAGDARPTCTMCSKTFQRQHQLTLHMNIHYME 2331
            |..:|.|    ...|.||...|.....|..|.|        |:.|.|.|:...||..|..:|..|
Zfish   444 EKPYKCSHCEKRFRSSSGKKVHERTHTGEKPFP--------CSRCKKRFRDSRQLIKHERVHTGE 500

  Fly  2332 RKFKCEPCSISFRTQGHLQKH--------ERSEAHK----NKVMMTSTFG--VPTTS-------- 2374
            :.:.|..|...||....|:.|        |:.:.|.    .|:.:.|..|  ..|.|        
Zfish   501 KPYPCNACGKRFRQSSTLRAHTVNIHNVKEKMDNHSIHTTEKLHLCSECGKSFATQSYLNAHQKI 565

  Fly  2375 --NPRPFECTDCKIAFRIHGHLAKHLRSKTHVQKLECLQ-----------KLPFGTYA------- 2419
              ..:||.||.|..:||....|.:|:.:.|..:..||.|           |:.||.:.       
Zfish   566 HFGEKPFTCTQCGRSFRYSSQLNEHMMTHTGEKPHECDQCGKRFLKASNLKVHFGVHTKEKPYPC 630

  Fly  2420 --------------EIERAGISLTEIDTSDCENSLISLKLLAQKLQ 2451
                          |.|:..|.:.:.....||.|.:....|.|.|:
Zfish   631 PVCGKMFARPSLVKEHEQIHIGVKKYQCLVCEKSFLRPGALKQHLK 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shnNP_001260883.1 C2H2 Zn finger 486..506 CDD:275368
zf-H2C2_2 499..523 CDD:290200
C2H2 Zn finger 514..536 CDD:275368
zf-C2H2 1816..1838 CDD:278523 7/21 (33%)
C2H2 Zn finger 1818..1838 CDD:275370 7/19 (37%)
zf-H2C2_2 1830..1855 CDD:290200 11/24 (46%)
zf-C2H2 1844..1868 CDD:278523 8/23 (35%)
C2H2 Zn finger 1846..1868 CDD:275370 7/21 (33%)
zf-C2H2 2307..2328 CDD:278523 7/20 (35%)
C2H2 Zn finger 2308..2328 CDD:275368 7/19 (37%)
zf-C2H2_jaz 2333..2359 CDD:288983 7/33 (21%)
C2H2 Zn finger 2336..2358 CDD:275368 7/29 (24%)
C2H2 Zn finger 2381..2403 CDD:275368 7/21 (33%)
znf983NP_001121715.1 C2H2 Zn finger 62..82 CDD:275368 7/19 (37%)
COG5048 86..521 CDD:227381 113/584 (19%)
C2H2 Zn finger 90..110 CDD:275368 7/19 (37%)
zf-H2C2_2 102..127 CDD:290200 6/24 (25%)
C2H2 Zn finger 118..138 CDD:275368 2/19 (11%)
zf-H2C2_2 131..154 CDD:290200 7/44 (16%)
C2H2 Zn finger 146..166 CDD:275368 4/19 (21%)
C2H2 Zn finger 174..190 CDD:275368 4/45 (9%)
C2H2 Zn finger 236..256 CDD:275368 4/22 (18%)
zf-H2C2_2 248..273 CDD:290200 4/27 (15%)
C2H2 Zn finger 264..284 CDD:275368 4/19 (21%)
zf-H2C2_2 276..300 CDD:290200 5/23 (22%)
C2H2 Zn finger 292..312 CDD:275368 4/19 (21%)
zf-H2C2_2 304..329 CDD:290200 3/24 (13%)
C2H2 Zn finger 320..340 CDD:275368 5/20 (25%)
C2H2 Zn finger 367..385 CDD:275368 3/18 (17%)
C2H2 Zn finger 393..413 CDD:275368 2/54 (4%)
C2H2 Zn finger 421..441 CDD:275368 5/20 (25%)
zf-H2C2_2 434..458 CDD:290200 6/24 (25%)
C2H2 Zn finger 449..469 CDD:275368 5/19 (26%)
C2H2 Zn finger 477..497 CDD:275368 7/19 (37%)
C2H2 Zn finger 505..526 CDD:275368 6/20 (30%)
C2H2 Zn finger 546..566 CDD:275368 4/19 (21%)
C2H2 Zn finger 574..594 CDD:275368 7/19 (37%)
C2H2 Zn finger 602..622 CDD:275368 5/19 (26%)
zf-H2C2_2 614..639 CDD:290200 3/24 (13%)
C2H2 Zn finger 630..650 CDD:275368 2/19 (11%)
C2H2 Zn finger 658..678 CDD:275368 6/19 (32%)
zf-H2C2_2 670..695 CDD:290200 3/7 (43%)
C2H2 Zn finger 686..706 CDD:275368
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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