DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shn and sma-9

DIOPT Version :9

Sequence 1:NP_001260883.1 Gene:shn / 36171 FlyBaseID:FBgn0003396 Length:2587 Species:Drosophila melanogaster
Sequence 2:NP_001361887.1 Gene:sma-9 / 181271 WormBaseID:WBGene00004862 Length:2242 Species:Caenorhabditis elegans


Alignment Length:2550 Identity:559/2550 - (21%)
Similarity:846/2550 - (33%) Gaps:996/2550 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   553 LSDQDAELSNSSSELPSRAGSPYEEPINS--------PTPSPSTLSAAKSAYIQQPPLPTYMQQL 609
            :|.|...:||:..::       ..|.:|.        .|..|.::|..:.|..||..:....|| 
 Worm     1 MSHQAIGISNNFQQV-------QREQLNHQRLLQAQLQTNGPGSVSQQQQASQQQQQVQHVQQQ- 57

  Fly   610 PLGSPAAGTLPPTTADNHHSATAQHRQSIDYKPYKPKFH-NASLYSCSS--------------KE 659
                               ..:.|.:|.:..:..:|:.. ||.:....|              :.
 Worm    58 -------------------QQSQQQQQQVASQQNQPQLQMNAQILQALSTPQGQNLVNMLLMQQA 103

  Fly   660 LQQQQQQLQIQQQQQQHQLAQQKLSIQLPLVQQPSLAHPTLSPSTQMKMKHHINSH-QIQLQLQQ 723
            |..||...|..||..|||||||:.. |....||...|........|.:.:|..... |.|.|.|.
 Worm   104 LNAQQTDTQNPQQIMQHQLAQQQAQ-QAQQAQQAQQARQQAEQQAQAQARHQAEQQAQQQAQQQA 167

  Fly   724 QQSLLAQQSLLAAMPPGGVYYLGQPSYYNQDTAAAIH-QHALAIQQFQIHLAQQQQQQQQQHPPL 787
            |.....||:.|||:         |.....|..|..:| |..|..||||....||||.||||    
 Worm   168 QARQQEQQAQLAAI---------QQQVTPQQFAQILHMQQQLQQQQFQQQQLQQQQLQQQQ---- 219

  Fly   788 VKATPPMQQPPSLPPQQLVRAN-SQISSVATAPATPTPAANL-STFASSSGGKQVNV-----AKV 845
                  :|| ..|..|||.:.. .|:..::.|......|.:: |.....|...||..     .::
 Worm   220 ------LQQ-QQLQQQQLQQQQLQQVLQISQAQQQAQQAQHVQSRQMQPSQQSQVQAQLQQQQQL 277

  Fly   846 QEHISKLISQNEAIVENK------EILLQKKYPKQLSRSRSFNNANSNNASQHGSNASALHANNS 904
            |:..::.:||.:|..:.:      :..||::......|:.:......|||||...:.::..|.:|
 Worm   278 QQQQAQQLSQQQAQQQQQLQQLQLQQFLQQQQQLHQQRAAAQQAQAQNNASQQRPSVASTPALSS 342

  Fly   905 QNNTN-------AQMPERETKVNLAQAIFQKQQHQLQQQQQQQITQ-----QQQQQLEQQN---- 953
            ....|       ||:.:        |.:.|:||.|.||.||.|..|     |||||.:.||    
 Worm   343 TPQLNDLTQTMQAQLQQ--------QLLLQQQQAQAQQAQQAQQAQLAQQAQQQQQGQSQNRTVS 399

  Fly   954 ----YYTYIQQQQ--------ECQQQQL-----EPPNGVVKRNAY---------------KPGVV 986
                |...:|.||        |.|:::|     |....:::..|.               :.|:.
 Worm   400 QALQYIQSMQLQQRADGTPNAESQEERLAQMLNEQQQRMLQNQAREAQHRQLLISSTPAPRGGIT 464

  Fly   987 MTTPV---KQQQQLPPPPSPLPMQTMQYRQDPA---TPVTKIEQPTTAVPVMPLNLSAKPKPTLV 1045
            |.||:   ::::|  |.||.:.:.|.     ||   |||        |||.|..|.:....|:..
 Worm   465 MGTPIGIARREEQ--PVPSTVAVTTA-----PAAVRTPV--------AVPPMKQNSNPSMNPSST 514

  Fly  1046 TVPVSSLSTSS-LAPT-------PTTS-------------------------------------- 1064
            :...|:.|:.. |||:       |::|                                      
 Worm   515 STSASATSSHQILAPSLSKPLEQPSSSKAASSGNESMSDHISRIISENEVILQGDPVIRKKRPYH 579

  Fly  1065 ------------TNPTSSSKTAPPP--------AQVNNSIIK--------NLLLNARGLAVPIGE 1101
                        :|...|::|:|.|        |..:.|:.:        ..|.:.:.|..||..
 Worm   580 RQIGAQSSVDHDSNSGGSTRTSPGPKDSRMLQAASRSQSLFELSGSKHFMGSLTSGQPLLRPIQA 644

  Fly  1102 GDDAVYS--CPICASEFRSADDLKLHNSTYC---------------------------QDASSSA 1137
            .:|..|:  |..|...|.:...|:.| ...|                           ||| :.|
 Worm   645 HNDPNYTPECIYCKLTFPNEAGLQAH-EVVCGKKKELEKAQIAQEGNPHSALKRRHTHQDA-TLA 707

  Fly  1138 PMSPASSPFRSNSISLSLPELK----------------SHMANSKNPLSLAKLAWSQLKTKRSSL 1186
            ..||.::...||....|.|.:|                :..::|..|.||.| .|.|     ..|
 Worm   708 MHSPLAAHTPSNMPGPSEPAIKLKKDDSTELDGTSKPDALQSSSSFPRSLPK-EWEQ-----HML 766

  Fly  1187 VLSRLSAAQTPARTSTVTAPTVTASAPAPAVATVTAPSSAPAPQIEALRFVDAPLPSPGPLLGKT 1251
            .|..|:|         :..|.|.|.........:|..||.....|.....:       .|:..| 
 Worm   767 TLQNLAA---------IIPPFVQAFLAKVLQTKLTMVSSGTLTHIYENYNI-------SPICVK- 814

  Fly  1252 PLVDYAQQSTPRKAQDSVVITKMHEDRQF-----------VIEAQPAKRIKTSDLVVASSSQQPT 1305
            ..:.:|.|.|.::.::..|    ..::|:           :|:|.|...::.::::    .||.|
 Worm   815 QFLHFASQLTDQQLEEMTV----ESEKQYLENAEEYQAKGIIQALPCDNLEVTEML----KQQET 871

  Fly  1306 SFNFSFNNQNSSNSVPELQSSKEERLRRFTSSGGSMIP----------------ISECP-----D 1349
            ..         ...||:|..|.:..|...:....:..|                |:|.|     |
 Worm   872 IM---------KGQVPDLLVSTQAVLHHCSGKRDNKDPSKNFVMIKLLHANGKDITEIPMKAETD 927

  Fly  1350 LD----------------------------NSPKMIRTPLLSGGSFQDVSVK-VNNETGSSSKER 1385
            ||                            ..|....|||......|..||| :..:||..    
 Worm   928 LDECNARFVYQMREFQKINNMNDRLIEVLKTDPAAAATPLFQVAREQSASVKFLIRQTGMV---- 988

  Fly  1386 KLMALVSGSGLLGVSS----GPQHFQFPPINSITAFNPLTLPPMSGGDKTTPVTPIPHVPGMPGP 1446
            .|..:.|.:..||:||    .|:..|.|  |.|.||:.:.:       |..|..|       ||.
 Worm   989 HLTIVASVAKRLGMSSMQQDVPESNQIP--NGIIAFDGVQI-------KQEPEDP-------PGD 1037

  Fly  1447 GSLTPQMPLLPPPPQQLQLPIPSSRGRSPNRKQPSPLLLGGGSGELKALSPFGGVQNVPSEFSRQ 1511
            ........::....:              ::||...:|....||:...:   ||           
 Worm  1038 DDDDDDDCIIEVVDE--------------DQKQHIAMLTAAASGQDIGI---GG----------- 1074

  Fly  1512 PPTPAQRQALQWNSKEAPKKAPFNFLRMADNVKTTEPEVRHFNLENVISGKQQELPLTPLHVDTP 1576
                                   .|.::..|:   ||.:  .|.:::::           |.|:.
 Worm  1075 -----------------------QFQKVTQNL---EPAI--VNQQSIVN-----------HGDSI 1100

  Fly  1577 NGNAPEETSPVASASASAKSKFLRPTSLPLKPGTFTPKRHHGITPTANTLPL--------ISPET 1633
            ..||   :.|:|:.:         |..:....|   |.:|..:     .:|:        :.|:|
 Worm  1101 VNNA---SIPIANNA---------PVQIVQNGG---PMQHEVV-----AMPVQLKLEDLRLEPQT 1145

  Fly  1634 PRPSKSCVQLYLNGHA------YTYLGL-------KCSTKMFYCTVNCPQPSYVAGMHKLSMYSV 1685
            ...:.....|.:||..      .|..|:       :..|...|.||...||.:......||||:.
 Worm  1146 SGDTDKPYWLVINGDIGGRPSFMTTAGMTSRTHRTRNITSETYVTVPRQQPMFAVQDGTLSMYAK 1210

  Fly  1686 WQV----------------------------------CEENQPH---------PLGFKLKQVMAL 1707
            |.|                                  ..::|.|         .:..|::...|.
 Worm  1211 WNVPVHNDAETKMNLSFMGMVSLRRRTGQQKFFKYTTANKDQGHYRMTHSSFWDISTKIRDRQAS 1275

  Fly  1708 ------------YDSR--QRMLGNG-SSTAMAGSGKLSYN---LVASQQIVSS-PSTSSTSSAFY 1753
                        ||::  :|::|.. ::|.:.|.......   |||.:...|: ||||..|....
 Worm  1276 MSEEKTPEESVDYDAQFIERLVGGTYTNTDLQGPSNAPVTIPVLVAPEDSTSAEPSTSGQSLLMR 1340

  Fly  1754 QGPLKTPPTVTIAA-LSEANVAA-------------KANEEAQAKKLETSPSGQP---------- 1794
            ....::||...|.. ||:.:.:|             ::.|:.:..|.|.||..:|          
 Worm  1341 SPRPQSPPLRDIKMDLSDDDYSATDLATTCKLEPKQESFEDVKDVKRENSPDARPTVIISDDAGR 1405

  Fly  1795 --------------------LVGGYESHEDYTYIRGRGRGRYVCSECGIRCKKPSMLKKHIRTHT 1839
                                ::||:.:.|.|.|:||||||||:|..|||||||||||||||::||
 Worm  1406 IRRERFANKYISRIRPKHDQIIGGHRTDEVYVYVRGRGRGRYICDRCGIRCKKPSMLKKHIKSHT 1470

  Fly  1840 DVRPFTCSHCNFSFKTKGNLTKHMQSKTHFKKC--IELG-INPGPMPPDSEFLDVDMDFDQQSST 1901
            |||.|.|:.||||||||||||||:.||||.::.  |:.| .:.|..|..|..:::|..:.:....
 Worm  1471 DVRAFNCTACNFSFKTKGNLTKHLSSKTHQRRISNIQAGNDSDGTTPSTSSMMNMDDGYHRNQPL 1535

  Fly  1902 SAGGRTSSMAGESDSDDYSDNESESSDTDESKSRQKEHEAARGLLSLSMTPPIPQSVSPYPQLQD 1966
                          .|||.:|.|:..|.|.....|.||:...|                      
 Worm  1536 --------------FDDYDNNSSDEEDYDHLNRMQAEHKFKFG---------------------- 1564

  Fly  1967 TPLPAASPANSIGSSGSQPKRLVCSFTSPKPPFDY----QKQEQYYSNPEESKPKRSVANEESAP 2027
                              .:.::...|:..||..:    .:.:.|:.:|:    :||..   |||
 Worm  1565 ------------------QEHILFERTAHTPPTRWCLVEAQNDHYWPSPD----RRSCM---SAP 1604

  Fly  2028 MDLTKPRGSILLISPSPVSVPAHDLPKSQAQQMHDVIFGTSGNESGFMKTLISVSDKVRISAEME 2092
                            ||:                                        :..:.:
 Worm  1605 ----------------PVA----------------------------------------MQRDFD 1613

  Fly  2093 EQAKHEAEGEDVQLQTYIKEHALHQAKIKQSQFSRSYLINTLYTAASPVMSSSSTLFTANSRPVM 2157
            ::|.....|                                   |.||.:|.             
 Worm  1614 DRAMTPVSG-----------------------------------ANSPYLSQ------------- 1630

  Fly  2158 SVNEVPSIEVHEVKTPEAIESPRSAPEQAPVILAQIAQEENEEPNIAEPHNANLPAAVQQPDVNE 2222
                    :||         ||.|...|:.:||   ....|::.|.:...|.:            
 Worm  1631 --------QVH---------SPMSTSSQSNIIL---DIPNNQKSNCSSVSNVS------------ 1663

  Fly  2223 FTGVLGNPTAPPTSSVTATSVSTTTAAPVAPSSTANSTQPAQRTVIVGEDGFKSSTPTSKSGDLQ 2287
                       |::|....|:||   .|...||::|        |:|....|.....|.|     
 Worm  1664 -----------PSNSQNFQSLST---VPTCASSSSN--------VLVPNVNFLQKDETLK----- 1701

  Fly  2288 HVSYGRGVPPAPIAGDARPTCTMCSKTFQRQHQLTLHMNIHYME------RKFKCEPCSISFRTQ 2346
                                |..|.:||::...||||.:.|.:|      |.::|..|.|..||:
 Worm  1702 --------------------CDQCDRTFRKISDLTLHQHTHNIEMQQSKNRMYQCSECKIPIRTK 1746

  Fly  2347 GHLQKH-ERSE-AHKNKVMMT---------STFGVPTTSNPRPFECTDCKIAFRIHGHLAKHLRS 2400
            ..|||| ||:. .|.::.:..         |..|.|:|||||.|.|.||.|.||.||.|||||||
 Worm  1747 AQLQKHLERNHGVHMDESVTACIDPLASTQSVLGGPSTSNPRSFMCVDCDIGFRKHGILAKHLRS 1811

  Fly  2401 KTHVQKLECLQKLPFGTYAEIERA--GISLTEIDTSDCENSLISLKLLAQKLQ---EKD------ 2454
            ||||.|||.||:||..|.:.|.:.  |..|.:|||:|||.:.|||..:.:||:   :||      
 Worm  1812 KTHVMKLESLQRLPVDTLSLITKKDNGACLNDIDTTDCEKARISLLAIVEKLRNEADKDEQGSVV 1876

  Fly  2455 --------------------------PGKLSSYTTPSGMMQLAQDAAGPVSQDSASEDGFSAAIA 2493
                                      |...|...|||    .||...|.||..|.|....|.:.:
 Worm  1877 PTTSIPAPQPVALTPEMIRALANAQTPVTASMTNTPS----TAQFPVGVVSTPSVSAVSASGSQS 1937

  Fly  2494 --SAIASLDNDSAG---------------NTPKRASSMS-------EDETVANGL---------- 2524
              |.::|.:|.:..               ::|..:|||.       :..|.||.:          
 Worm  1938 NVSCVSSFNNSTMSPNPTVVPQVFPTPNPSSPLESSSMQFRKKAVLDSATHANDMPRTILRISEI 2002

  Fly  2525 ------NHSLKRRLPGSF----SSTGEESDNPP------ESSGEKRARSG---------QELPV- 2563
                  ||.|.|.|  ||    :|..|.|...|      ..|..||:.|.         ::|.| 
 Worm  2003 PSSLPVNHQLHRDL--SFLAHTTSRSESSITSPIVSSSTNFSYRKRSESSLSGSSPTHTKKLMVW 2065

  Fly  2564 --PVAVPVAASAAAS 2576
              |:|.|...|..|:
 Worm  2066 NPPLAEPSFYSPKAA 2080

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shnNP_001260883.1 C2H2 Zn finger 486..506 CDD:275368
zf-H2C2_2 499..523 CDD:290200
C2H2 Zn finger 514..536 CDD:275368
zf-C2H2 1816..1838 CDD:278523 17/21 (81%)
C2H2 Zn finger 1818..1838 CDD:275370 16/19 (84%)
zf-H2C2_2 1830..1855 CDD:290200 18/24 (75%)
zf-C2H2 1844..1868 CDD:278523 18/23 (78%)
C2H2 Zn finger 1846..1868 CDD:275370 17/21 (81%)
zf-C2H2 2307..2328 CDD:278523 8/20 (40%)
C2H2 Zn finger 2308..2328 CDD:275368 8/19 (42%)
zf-C2H2_jaz 2333..2359 CDD:288983 11/27 (41%)
C2H2 Zn finger 2336..2358 CDD:275368 11/23 (48%)
C2H2 Zn finger 2381..2403 CDD:275368 16/21 (76%)
sma-9NP_001361887.1 zf-C2H2 1447..1469 CDD:333835 17/21 (81%)
C2H2 Zn finger 1449..1469 CDD:275370 16/19 (84%)
zf-H2C2_2 1461..1486 CDD:372612 18/24 (75%)
C2H2 Zn finger 1477..1499 CDD:275370 17/21 (81%)
C2H2 Zn finger 1702..1722 CDD:275370 8/19 (42%)
C2H2 Zn finger 1736..1757 CDD:275370 11/20 (55%)
C2H2 Zn finger 1792..1814 CDD:275368 16/21 (76%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 50 1.000 Domainoid score I7842
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 359 1.000 Inparanoid score I1291
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0014299
OrthoInspector 1 1.000 - - oto20134
orthoMCL 1 0.900 - - OOG6_115701
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3898
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.980

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