Sequence 1: | NP_001260883.1 | Gene: | shn / 36171 | FlyBaseID: | FBgn0003396 | Length: | 2587 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001361887.1 | Gene: | sma-9 / 181271 | WormBaseID: | WBGene00004862 | Length: | 2242 | Species: | Caenorhabditis elegans |
Alignment Length: | 2550 | Identity: | 559/2550 - (21%) |
---|---|---|---|
Similarity: | 846/2550 - (33%) | Gaps: | 996/2550 - (39%) |
- Green bases have known domain annotations that are detailed below.
Fly 553 LSDQDAELSNSSSELPSRAGSPYEEPINS--------PTPSPSTLSAAKSAYIQQPPLPTYMQQL 609
Fly 610 PLGSPAAGTLPPTTADNHHSATAQHRQSIDYKPYKPKFH-NASLYSCSS--------------KE 659
Fly 660 LQQQQQQLQIQQQQQQHQLAQQKLSIQLPLVQQPSLAHPTLSPSTQMKMKHHINSH-QIQLQLQQ 723
Fly 724 QQSLLAQQSLLAAMPPGGVYYLGQPSYYNQDTAAAIH-QHALAIQQFQIHLAQQQQQQQQQHPPL 787
Fly 788 VKATPPMQQPPSLPPQQLVRAN-SQISSVATAPATPTPAANL-STFASSSGGKQVNV-----AKV 845
Fly 846 QEHISKLISQNEAIVENK------EILLQKKYPKQLSRSRSFNNANSNNASQHGSNASALHANNS 904
Fly 905 QNNTN-------AQMPERETKVNLAQAIFQKQQHQLQQQQQQQITQ-----QQQQQLEQQN---- 953
Fly 954 ----YYTYIQQQQ--------ECQQQQL-----EPPNGVVKRNAY---------------KPGVV 986
Fly 987 MTTPV---KQQQQLPPPPSPLPMQTMQYRQDPA---TPVTKIEQPTTAVPVMPLNLSAKPKPTLV 1045
Fly 1046 TVPVSSLSTSS-LAPT-------PTTS-------------------------------------- 1064
Fly 1065 ------------TNPTSSSKTAPPP--------AQVNNSIIK--------NLLLNARGLAVPIGE 1101
Fly 1102 GDDAVYS--CPICASEFRSADDLKLHNSTYC---------------------------QDASSSA 1137
Fly 1138 PMSPASSPFRSNSISLSLPELK----------------SHMANSKNPLSLAKLAWSQLKTKRSSL 1186
Fly 1187 VLSRLSAAQTPARTSTVTAPTVTASAPAPAVATVTAPSSAPAPQIEALRFVDAPLPSPGPLLGKT 1251
Fly 1252 PLVDYAQQSTPRKAQDSVVITKMHEDRQF-----------VIEAQPAKRIKTSDLVVASSSQQPT 1305
Fly 1306 SFNFSFNNQNSSNSVPELQSSKEERLRRFTSSGGSMIP----------------ISECP-----D 1349
Fly 1350 LD----------------------------NSPKMIRTPLLSGGSFQDVSVK-VNNETGSSSKER 1385
Fly 1386 KLMALVSGSGLLGVSS----GPQHFQFPPINSITAFNPLTLPPMSGGDKTTPVTPIPHVPGMPGP 1446
Fly 1447 GSLTPQMPLLPPPPQQLQLPIPSSRGRSPNRKQPSPLLLGGGSGELKALSPFGGVQNVPSEFSRQ 1511
Fly 1512 PPTPAQRQALQWNSKEAPKKAPFNFLRMADNVKTTEPEVRHFNLENVISGKQQELPLTPLHVDTP 1576
Fly 1577 NGNAPEETSPVASASASAKSKFLRPTSLPLKPGTFTPKRHHGITPTANTLPL--------ISPET 1633
Fly 1634 PRPSKSCVQLYLNGHA------YTYLGL-------KCSTKMFYCTVNCPQPSYVAGMHKLSMYSV 1685
Fly 1686 WQV----------------------------------CEENQPH---------PLGFKLKQVMAL 1707
Fly 1708 ------------YDSR--QRMLGNG-SSTAMAGSGKLSYN---LVASQQIVSS-PSTSSTSSAFY 1753
Fly 1754 QGPLKTPPTVTIAA-LSEANVAA-------------KANEEAQAKKLETSPSGQP---------- 1794
Fly 1795 --------------------LVGGYESHEDYTYIRGRGRGRYVCSECGIRCKKPSMLKKHIRTHT 1839
Fly 1840 DVRPFTCSHCNFSFKTKGNLTKHMQSKTHFKKC--IELG-INPGPMPPDSEFLDVDMDFDQQSST 1901
Fly 1902 SAGGRTSSMAGESDSDDYSDNESESSDTDESKSRQKEHEAARGLLSLSMTPPIPQSVSPYPQLQD 1966
Fly 1967 TPLPAASPANSIGSSGSQPKRLVCSFTSPKPPFDY----QKQEQYYSNPEESKPKRSVANEESAP 2027
Fly 2028 MDLTKPRGSILLISPSPVSVPAHDLPKSQAQQMHDVIFGTSGNESGFMKTLISVSDKVRISAEME 2092
Fly 2093 EQAKHEAEGEDVQLQTYIKEHALHQAKIKQSQFSRSYLINTLYTAASPVMSSSSTLFTANSRPVM 2157
Fly 2158 SVNEVPSIEVHEVKTPEAIESPRSAPEQAPVILAQIAQEENEEPNIAEPHNANLPAAVQQPDVNE 2222
Fly 2223 FTGVLGNPTAPPTSSVTATSVSTTTAAPVAPSSTANSTQPAQRTVIVGEDGFKSSTPTSKSGDLQ 2287
Fly 2288 HVSYGRGVPPAPIAGDARPTCTMCSKTFQRQHQLTLHMNIHYME------RKFKCEPCSISFRTQ 2346
Fly 2347 GHLQKH-ERSE-AHKNKVMMT---------STFGVPTTSNPRPFECTDCKIAFRIHGHLAKHLRS 2400
Fly 2401 KTHVQKLECLQKLPFGTYAEIERA--GISLTEIDTSDCENSLISLKLLAQKLQ---EKD------ 2454
Fly 2455 --------------------------PGKLSSYTTPSGMMQLAQDAAGPVSQDSASEDGFSAAIA 2493
Fly 2494 --SAIASLDNDSAG---------------NTPKRASSMS-------EDETVANGL---------- 2524
Fly 2525 ------NHSLKRRLPGSF----SSTGEESDNPP------ESSGEKRARSG---------QELPV- 2563
Fly 2564 --PVAVPVAASAAAS 2576 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
shn | NP_001260883.1 | C2H2 Zn finger | 486..506 | CDD:275368 | |
zf-H2C2_2 | 499..523 | CDD:290200 | |||
C2H2 Zn finger | 514..536 | CDD:275368 | |||
zf-C2H2 | 1816..1838 | CDD:278523 | 17/21 (81%) | ||
C2H2 Zn finger | 1818..1838 | CDD:275370 | 16/19 (84%) | ||
zf-H2C2_2 | 1830..1855 | CDD:290200 | 18/24 (75%) | ||
zf-C2H2 | 1844..1868 | CDD:278523 | 18/23 (78%) | ||
C2H2 Zn finger | 1846..1868 | CDD:275370 | 17/21 (81%) | ||
zf-C2H2 | 2307..2328 | CDD:278523 | 8/20 (40%) | ||
C2H2 Zn finger | 2308..2328 | CDD:275368 | 8/19 (42%) | ||
zf-C2H2_jaz | 2333..2359 | CDD:288983 | 11/27 (41%) | ||
C2H2 Zn finger | 2336..2358 | CDD:275368 | 11/23 (48%) | ||
C2H2 Zn finger | 2381..2403 | CDD:275368 | 16/21 (76%) | ||
sma-9 | NP_001361887.1 | zf-C2H2 | 1447..1469 | CDD:333835 | 17/21 (81%) |
C2H2 Zn finger | 1449..1469 | CDD:275370 | 16/19 (84%) | ||
zf-H2C2_2 | 1461..1486 | CDD:372612 | 18/24 (75%) | ||
C2H2 Zn finger | 1477..1499 | CDD:275370 | 17/21 (81%) | ||
C2H2 Zn finger | 1702..1722 | CDD:275370 | 8/19 (42%) | ||
C2H2 Zn finger | 1736..1757 | CDD:275370 | 11/20 (55%) | ||
C2H2 Zn finger | 1792..1814 | CDD:275368 | 16/21 (76%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 50 | 1.000 | Domainoid score | I7842 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 359 | 1.000 | Inparanoid score | I1291 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0014299 | |
OrthoInspector | 1 | 1.000 | - | - | oto20134 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_115701 | |
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R3898 |
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
7 | 6.980 |