DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shn and hivep2b

DIOPT Version :9

Sequence 1:NP_001260883.1 Gene:shn / 36171 FlyBaseID:FBgn0003396 Length:2587 Species:Drosophila melanogaster
Sequence 2:XP_005158638.1 Gene:hivep2b / 100536055 ZFINID:ZDB-GENE-130530-562 Length:1798 Species:Danio rerio


Alignment Length:2120 Identity:466/2120 - (21%)
Similarity:745/2120 - (35%) Gaps:634/2120 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   328 QASG--DAVRTTSLSSNSSLSPPP---TTPLANGHHL--MTQQQSHQQVQQQQQQQQTPPPSVAI 385
            |:||  |.:|........|:||.|   ...||:|:.|  .:::|||.|::               
Zfish    35 QSSGSEDKIRLAEQPQTPSVSPSPGIEPQVLASGNTLTSKSKEQSHVQLR--------------- 84

  Fly   386 HEFSANFVNSNHVNAIGHEESIISNSGYKAAGRTRTPLANSNSNTNSTSNSNSNHAANATLSPAS 450
                                            |...||.|.....                    
Zfish    85 --------------------------------RKNVPLPNKRYLQ-------------------- 97

  Fly   451 FAQHQQLTQPTTVSPGIPGGAAAPNPACEKSGRYVCQYCNLICAKPSVLEKHIRAHTNERPYPCD 515
             |:::.|:          ||.........|:|:||||||...|||||||:||||:||.||||||.
Zfish    98 -AEYEMLS----------GGLHKKEQKSVKTGKYVCQYCGRACAKPSVLKKHIRSHTGERPYPCI 151

  Fly   516 TCGIAFKTKSNLYKHCRSRSHAARARGLEVPADAD--------DGLSDQDAELSNSSSE-----L 567
            .||.:||||||||||.:|.:||.:| ||...::.|        :|....|||.|:.:.|     |
Zfish   152 PCGFSFKTKSNLYKHRKSHTHAVKA-GLVSVSEQDCKNTDEVAEGEMHSDAEQSSDTDEEVAEDL 215

  Fly   568 PSRAGSPYEEPINSPTPSPSTLSAAKSAYIQQPPLPTYMQQLPLGSPAAGTLPPTTADNHHSATA 632
            .....|..:|...........|:..::.:..|.||.  .:..|.|..:.......||.   .|.|
Zfish   216 SLDTTSHIKETEGYVQEKVGKLAKKEALFPSQTPLK--KETGPSGKVSLWQFREMTAP---VAIA 275

  Fly   633 QHRQSIDYKPYKPKFHNASLYSCSSKELQQQQQQLQI---------------QQQQQQHQLAQQK 682
            |..|.:::...|.|.    ....|.|:.|:..|.|.:               :.:..:.|:.|..
Zfish   276 QIDQMVEFSTIKQKL----ALRLSEKKSQESDQSLSLPSSYSKGSTDSGYFSRSESAEQQINQSS 336

  Fly   683 LSIQLPLVQQPSLAHPTLSPSTQMKMKHHINSHQIQLQLQQQQSLLAQQSLLAAMPPGGVYYLGQ 747
            .|.:   ..|..:......|:|:.|....:.:....:.......::   :|...|.||       
Zfish   337 ASAK---SYQEIMFGKCYRPATRPKQSITVQTCMTDINEATSSFMI---TLNKGMMPG------- 388

  Fly   748 PSYYNQDTAAAIHQHAL-AIQQFQIHLAQQQQQQQQQHPPLVKATPPMQQPPS------LPPQQL 805
                  ||.::||:... .::..:|.....|::..|:          .|.|.|      |.....
Zfish   389 ------DTDSSIHRSKKDLVRSIKIDSESFQEEDYQE----------CQIPSSDLLETALESSVF 437

  Fly   806 VRANSQISSVATAPATPTPAANLSTFASSSGGKQVNVAKVQ-----------EHI---------- 849
            :|:||..:|..:...||....:.::|.....|..|......           ||.          
Zfish   438 LRSNSLPTSSKSNLNTPQGLRSSNSFDERMTGADVTYRGAMGMRRLMRQSAFEHSANEGHAESDC 502

  Fly   850 -------------------SKLISQN-------------------------EAIVENKEILLQKK 870
                               ||:.::|                         :.:.|.::..:|.|
Zfish   503 YTHLACSLKSDLKIHSIDDSKMAAENFQETETCSVCPGHSSESSTRKRRKDKTVTEEEDFHIQDK 567

  Fly   871 YPKQL--------SRSRSFNNANSNNASQHGSNA-SALHANNSQNNTNAQMPERETKVNLAQAI- 925
             |..:        ::..|.::..|:...:.|||. |.:...||.|..|:.....|.:.:....| 
Zfish   568 -PSNVTGLSEDLETKQISSDSVVSDTERKAGSNVISVIQHTNSLNRLNSAEKLSEVRSHQLDKIG 631

  Fly   926 -FQKQQHQLQQQQQQQITQQQQQQLEQQNYYTYIQQQQECQQQQLEPPNGVVKRNAYKPGVVMTT 989
             |.::.|.::..:.....|........|..:.:   :|...|..::.|...|.....:|..|...
Zfish   632 KFMEKGHSMECHRTGSECQWGPCGFLHQKLHMH---KQPTSQPNIQVPEIRVTVEPDRPEKVPDV 693

  Fly   990 PVKQQQQLPPPPSPLPMQTMQYRQDPATPVTKIEQPTTAVPVMPLNLSAKPKPTLVTVPVSSLST 1054
            .|||:::          .|.:: |.|....|..:.|...:|      ..|.:..|..:..||..:
Zfish   694 GVKQREK----------HTEEF-QWPQRSETLSQFPMEKLP------PKKKRLRLAEMECSSGES 741

  Fly  1055 S------SLAPTPTTSTNPTSSSKTAPPPAQVNNSIIKNLLLNARGLAVPIGEGDDAVYSCPICA 1113
            |      ||:.:|:..:|.:.||       ..:.|:.:...||......|    |::  |.|:  
Zfish   742 SFESACTSLSRSPSQDSNLSHSS-------SFSQSLDREETLNLVSQINP----DES--SKPL-- 791

  Fly  1114 SEFRSA-DDLKLHNSTYCQDASSSAPMSPAS--SPFRSNSISLSLPELKSHMANSKNPLSLAKLA 1175
             ||.|. ...:.|:....:.||..||....|  :.|||          ||....|.:|.|..:| 
Zfish   792 -EFLSVPGSSQSHHREMRRSASEQAPYKLPSEIAEFRS----------KSFDYGSLSPSSTYRL- 844

  Fly  1176 WSQLKTKRSSLVLSRLSAAQTPARTSTVTAPTVTASAPAPAVATVTAPSSAPAPQIEALRFVDAP 1240
             .::|.:|.:.::.:.|.:..|.......:..::.....|         ..|...||.:|:    
Zfish   845 -EEVKERRRAFLVRQASLSGEPETQGGNFSDEISKRTTLP---------FTPEGSIEKMRY---- 895

  Fly  1241 LPSPGPLLGKTPLVDYAQQSTPRKAQDSVVITKMHEDRQFVIEAQPAKRIKTSDLVVASSSQ--Q 1303
                 .|:..:....:.|.|.                                   |.||||  :
Zfish   896 -----SLISGSSFPHHRQYSP-----------------------------------VQSSSQHVK 920

  Fly  1304 PTSFNFSFNNQNSSNSVPELQSSKEERLRRFTSSGGSMIPISECPDLDNSPKM---IRTPLLSGG 1365
            ||..|           |.::::              .|:.|.:.|:...||:.   :|.|.    
Zfish   921 PTVCN-----------VHDMEN--------------VMLVIKKEPEESKSPETYVNLREPQ---- 956

  Fly  1366 SFQDVSVKVNNETGS---SSKERKLMALVSGSGLLGVSSGPQHFQFPPINSITAFNPLTLPPMS- 1426
              :|.|..:.|...:   .|:.::.:|....||||    .|...|.    .:.::..:|...:| 
Zfish   957 --EDCSQSLGNVLSTIAVLSQAQQALASQCSSGLL----VPVRIQM----QVPSYGNITYTSISH 1011

  Fly  1427 --GGDKTTPVTPIPHVPGMPGPGSLTPQMPLLPPPPQQLQLPIPSSRGRSPNRKQPSPLLLGGGS 1489
              ......|::.:.|...    .|.:.|:..|...|.:|:..||.|..........:|   .||:
Zfish  1012 ILDSHIQKPISCLEHKKS----SSQSQQLHSLQASPAKLKTGIPLSLTSKTISTTEAP---SGGA 1069

  Fly  1490 GELKALSPFGGV--------------QNVPSEFSRQPPTPAQRQALQWNSKEAPKKAPFNFLRMA 1540
            .: :.|||...:              :|:..:...      :..|::..:.|..|::|.:     
Zfish  1070 NK-RMLSPASSIELFIEAKQQKRVKDENIYGQIVE------ELSAVELGNLEVEKESPKS----- 1122

  Fly  1541 DNVKTTEPEVRHFNLENVISGKQQELPLTPLHVDTPN----GNAPEETSPVASASASAKSKFLRP 1601
                       .|..|          |:..:.:|...    .||..::|...|..|:...:...|
Zfish  1123 -----------EFTSE----------PIDKMDMDEATQEFYSNAELQSSARISQDAAIMEQKPTP 1166

  Fly  1602 TSLPLKPGTFTPKRHHGITPTANTLPLISPETPRPSKSCVQLYLNGHAYTYL-----GLKCSTKM 1661
            .|:...        ||                   |.||:.|..:....|.|     ||..:|.|
Zfish  1167 ESMMAS--------HH-------------------SASCISLMPSAITGTLLFSKFPGLHTTTCM 1204

  Fly  1662 FYCTVNCPQPSYVAGMHKLSMYSVWQV-CEENQPHPLGFKLKQVMALYDSRQRMLGNGSSTAMAG 1725
            .:|.:|..:|:....:...|.|:.|.| |  :.|:|.......|:||..|:|:            
Zfish  1205 SWCYLNTTKPNSTHTVAPFSEYASWFVRC--HNPNPPDISTGMVLALLRSKQQ------------ 1255

  Fly  1726 SGKLSYNLVASQQIVSSPSTSSTSSAFYQGPLKTPPTVTIA------------ALSEANVAAKA- 1777
                ..|.:.:...:..|....||:.:      ||....||            .|.|.:...|: 
Zfish  1256 ----RQNAIYTIATIYQPGLLVTSTPW------TPKQEQIALDYREEDTKQDIRLREISHRGKSL 1310

  Fly  1778 NEEAQAKKLETSPSGQPLV-GGYESHEDYTYIRGRGRGRYVCSECGIRCKKPSMLKKHIRTHTDV 1841
            .|:..:...:|.|....:. |||:|:|:|.|:||||||:|:|.||||||||||||:|||||||||
Zfish  1311 REDVSSIIRQTEPMRVKIFEGGYKSNEEYVYVRGRGRGKYICEECGIRCKKPSMLRKHIRTHTDV 1375

  Fly  1842 RPFTCSHCNFSFKTKGNLTKHMQSKTHFKKCIELGINP----------------GPMPPDS---- 1886
            ||:.|..|||:|||||||||||:||.|.|||:|||::|                |.||.:.    
Zfish  1376 RPYICKCCNFAFKTKGNLTKHMKSKAHMKKCLELGVSPTAMDNTEDADDTQKSLGIMPAEQTIKH 1440

  Fly  1887 EFLDVDMDFDQQSSTSAGGRTSSMAGESDSDDYSDNESESSDTDESKSRQKEHEAARGLLSLSMT 1951
            :|.||:              .|..|.|.:.|:..|:|.:...|.::.||....:      |.::.
Zfish  1441 QFSDVE--------------DSDGADEDEPDEDEDDECDGDSTPKTLSRSTSPQ------SYAVN 1485

  Fly  1952 PP-----IPQSVS-----PYPQLQDTPLPAASPANSIGSSGSQPKRLVCSF--TSPK---PPFDY 2001
            .|     :|:...     |..||:.:.|......||..||        |||  ..|:   |.:|.
Zfish  1486 KPCMSGCLPKHFDSGCNLPKEQLEASSLTIEDDLNSDQSS--------CSFELCPPQLLSPCWDS 1542

  Fly  2002 QKQEQYYSNPEESKPKRS-VANEESAPMDLTKPRGSILL---ISP----SPVSVPAHDLPKSQAQ 2058
            .:| :|.|...:..|:|. :::.:|:|:....||..:.:   .||    |||.....|....:||
Zfish  1543 PRQ-RYMSPRGDLSPQRHLLSSRDSSPLRAVSPRRDLSIRGDFSPIRQLSPVRPTGLDTSGQRAQ 1606

  Fly  2059 Q---MHDVIFGTSGNESGFM--KTLISVSDKVRISAEMEEQAKHE--AEGEDVQL---------- 2106
            .   .|.|.........|..  :|.:.:...||..|........|  .:..|..|          
Zfish  1607 SPLGRHKVALRAVSPRRGSYQHRTHMDLGRSVRFQASPIRPIIGETGVDQGDTSLNLIVPVGLCS 1671

  Fly  2107 --------QTYIKEH-ALHQAKIKQSQFSRSYLINTLYTAASPVMSSSSTLFTANSRPVMSVNEV 2162
                    |..|..| .||    .|.|.|....:..:.....|.:|:|..:...||.|     .:
Zfish  1672 SKDLPKTRQPDIFSHLPLH----SQGQVSTPVPMVPIGVLRMPSISTSGAVAERNSLP-----SI 1727

  Fly  2163 PSIEVHEVKTPEAIESPRSAPEQAPVILAQIAQEENEEPN 2202
            |...:.|...|.  ::..|.|:.|.....:||......||
Zfish  1728 PQGNILETAAPG--QTSASVPDPAVAYSGEIATYSTGLPN 1765

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shnNP_001260883.1 C2H2 Zn finger 486..506 CDD:275368 15/19 (79%)
zf-H2C2_2 499..523 CDD:290200 16/23 (70%)
C2H2 Zn finger 514..536 CDD:275368 14/21 (67%)
zf-C2H2 1816..1838 CDD:278523 18/21 (86%)
C2H2 Zn finger 1818..1838 CDD:275370 17/19 (89%)
zf-H2C2_2 1830..1855 CDD:290200 18/24 (75%)
zf-C2H2 1844..1868 CDD:278523 17/23 (74%)
C2H2 Zn finger 1846..1868 CDD:275370 17/21 (81%)
zf-C2H2 2307..2328 CDD:278523
C2H2 Zn finger 2308..2328 CDD:275368
zf-C2H2_jaz 2333..2359 CDD:288983
C2H2 Zn finger 2336..2358 CDD:275368
C2H2 Zn finger 2381..2403 CDD:275368
hivep2bXP_005158638.1 C2H2 Zn finger 122..142 CDD:275368 15/19 (79%)
zf-H2C2_2 135..159 CDD:316026 16/23 (70%)
C2H2 Zn finger 150..170 CDD:275368 13/19 (68%)
zf-C2H2 1350..1372 CDD:306579 18/21 (86%)
C2H2 Zn finger 1352..1372 CDD:275370 17/19 (89%)
zf-C2H2_2 <1378..>1404 CDD:315435 18/25 (72%)
C2H2 Zn finger 1380..1398 CDD:275370 14/17 (82%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 108 1.000 Domainoid score I6359
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm25148
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR45944
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
55.060

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