DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shn and hivep3

DIOPT Version :9

Sequence 1:NP_001260883.1 Gene:shn / 36171 FlyBaseID:FBgn0003396 Length:2587 Species:Drosophila melanogaster
Sequence 2:XP_012812809.1 Gene:hivep3 / 100489803 XenbaseID:XB-GENE-482557 Length:2140 Species:Xenopus tropicalis


Alignment Length:2487 Identity:530/2487 - (21%)
Similarity:809/2487 - (32%) Gaps:959/2487 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   379 PPPSVAIHEFSANFVNSNHVNAIGHEESIISNSGYKAAGR---TRTPLANSNSNTNSTS------ 434
            ||..|.:.:   :|.:|..:...|....:         ||   .:.||:...|.:.:||      
 Frog    40 PPGEVVVQQ---SFPSSLKIPREGPPRRV---------GRPCKPKGPLSEQLSKSQTTSPAFMAP 92

  Fly   435 NSNSNHAANATL---------SPAS--FAQHQQLTQPT---------------TVSPGIPGGAAA 473
            .:..:|:...:.         .|:|  .|.|.::|.||               :|..|.......
 Frog    93 RAAPDHSLEGSTWQVVDPIHPGPSSSYSALHARITCPTEDPSQKTYLHRPTEVSVKQGEEPHKKE 157

  Fly   474 PNPACEKSGRYVCQYCNLICAKPSVLEKHIRAHTNERPYPCDTCGIAFKTKSNLYKHCRSRSHAA 538
            ..|  :|.|:|:||||:..|||||||:||||:||.||||||..||.:||||||||||.:|.:|..
 Frog   158 KKP--QKPGKYICQYCSRPCAKPSVLQKHIRSHTGERPYPCIPCGFSFKTKSNLYKHRKSHAHRI 220

  Fly   539 RARGLEVPADADDGLSDQDAELSNSSSELPSRAGSPYEEPINSPTPSPSTLSAAKSAYIQQPPLP 603
            :| ||         .|:...|:.....|:....|    |.|:.||...||.|..:::.:      
 Frog   221 KA-GL---------ASETGGEMYPPCLEMEQLGG----EEIDYPTEGESTDSEEETSTM------ 265

  Fly   604 TYMQQLPLGSPAAGTLPPTTADNHHSATAQHRQSIDYKPYKPKFHNASLYSCSSKELQQQQQQLQ 668
                                                               .|..||..:|:|. 
 Frog   266 ---------------------------------------------------LSLTELSPRQKQC- 278

  Fly   669 IQQQQQQHQLAQQKLSIQLPLVQQPSLA----------HPTLSPSTQMKMKHHINSHQIQLQLQQ 723
                .....:.|:.||.:|..|..||::          .|::.|..:.:..|.| ..::.|:|.:
 Frog   279 ----HSSFIVGQKVLSHELTSVPHPSVSIKPEEFTQFGDPSMDPLHKSEDTHTI-KQKLALRLSE 338

  Fly   724 QQSLLAQQSLLAAMPPGGVYYLGQPSYYNQDTAAAIHQHALAIQQFQIHLAQQQQQQQQQHPPLV 788
            ::....:|..|:....|..    :..|:::..:|                      :||..||..
 Frog   339 RKKASEEQMFLSPGSKGST----ESGYFSRSESA----------------------EQQLSPPNT 377

  Fly   789 KA---------------------TPPMQQ-----PPSLPPQQLVRANSQISSVATAPATPTPAAN 827
            .|                     ||.:||     .||:.|             .:.|.|      
 Frog   378 NAKSYAEIILGKCGRIGQRSTMTTPALQQGPTEEKPSIGP-------------ISVPRT------ 423

  Fly   828 LSTFASSSGGKQVNVAKVQEHISKLISQNEAIVENKEILLQKKYPKQLSRSRSFNNANSNNASQH 892
                            :|.|||:|||:.|||:|:..||...|.....|||..|..          
 Frog   424 ----------------QVIEHITKLITINEAVVDTSEIDSVKPRRSSLSRRSSIE---------- 462

  Fly   893 GSNASALHANNSQNNTNAQMPERETKVNLAQAIFQKQQHQ-LQQQQQQQITQQQQQQLEQQNYYT 956
             |..:||:.:..|.:... :||:           .|.:|. |..:|....|:             
 Frog   463 -SPKAALYRDPFQFDPKC-LPEK-----------TKGEHSFLSLKQSHSATE------------- 501

  Fly   957 YIQQQQECQQQQLEPPNGVVKRNAYKPGVVMTTPVKQQQQLPPP----PSPLPMQTMQYRQDPAT 1017
                                           |.|:.:...:|..    .||...:......|   
 Frog   502 -------------------------------TVPLLRSHSMPSSACTISSPHTFRASYSFDD--- 532

  Fly  1018 PVTKIEQPTTAVPVMPLNLSAKPKPTLVTVPVSSLSTSSLAPTPTTSTNPTSSSKTAPPPAQVNN 1082
               :|.:|  ||.......|:.|: .|...|...|      |.....|:...||.....|.:.::
 Frog   533 ---RIVEP--AVSSQSHVFSSHPR-LLKRQPAIEL------PLGMEYTSEECSSVIKDTPCKPSD 585

  Fly  1083 SI-IKNLLLNARGLAVPIGEGDDAVYSCPICASEFRSADDLKLHNSTYCQD-------------- 1132
            .: :|...|:.:...|...:|   :|.|.||.:.::...:.:.|...||.:              
 Frog   586 ELEVKESELSKKSGKVGRAKG---LYECNICGARYKKRGNYETHKKYYCSELQTLKPQIAGDQGS 647

  Fly  1133 ------------------------------------------------------ASSSAPMSPAS 1143
                                                                  |:|.||.||.:
 Frog   648 VETRKGFTEHEKWPHMLHYKVSPGLEQSTIRKRRIVKSPGDDEESQSFDMPESQATSVAPGSPFT 712

  Fly  1144 SPFR---------------SNSISLS-----LPELKS--------------HMANSKNPLSLAKL 1174
            ...|               |.|:|:|     :|.|:|              |.::.:...|:.:|
 Frog   713 LSDRALNIHRDAGKTATDYSESVSVSDVQCRMPALESKEKAVLSKEISVIQHTSSFERSESMEQL 777

  Fly  1175 AWSQLKTKRSSLVLSRLSAAQTP-------ARTSTVTAPTVTASAPAPAVATVTAPSSAPAPQIE 1232
            :....:.|.::|. |..||..||       .|...:..|.:..:.......|...|  .|..|.:
 Frog   778 SSFDEEDKPAALA-SLCSARHTPHSLQPRLVRQHNIQVPEILVTEEPDKSETDLEP--PPKEQGK 839

  Fly  1233 ALRFVDAPLPSPGPLLGKTPLVDYAQQSTPRKAQ---------------DSVVITK--------- 1273
            |..|   ..|.....|.:.|    |::..|:|.:               :|:.:|:         
 Frog   840 AEEF---QWPQRSQTLSQLP----AEKLPPKKKRLRLAEMTQSSGESSFESMSLTRSPSQESSVS 897

  Fly  1274 --------MHEDRQFVIEAQ------PAKRIKTSDLVVAS------------SSQQPT------- 1305
                    ...:..|..|.|      |:|......|.|.|            |.|.|.       
 Frog   898 HASSRSVSFEREEGFKAEMQCQTSESPSKSQGHHMLTVPSHHHHAREMRRSASEQTPNVSQTPQI 962

  Fly  1306 ----SFNFSFNNQNS--SNSVPELQSSKEERLRRFTSSGGSMIP-ISECPDLDNSPKMIR----- 1358
                |.:|.:.|..|  |.|.|..|    ||.:.|:....|:.. ::..||:     |:|     
 Frog   963 SENRSKSFDYGNLTSPASTSSPTAQ----ERRKCFSIRQTSLSKHVAHEPDM-----MLRDWSET 1018

  Fly  1359 ------TPLLSGGSFQDVSVKVNNETGSSSKERKLMALVSGSGLLGVSSGPQHFQFP-------- 1409
                  :.:::...|...||       :|.|::|             |..||..|.|        
 Frog  1019 EQPSSSSHIIAKSVFYQSSV-------TSQKDQK-------------SDSPQPKQTPKAVQPNTE 1063

  Fly  1410 -----------PINSITAFNPLTLPPMSGGDKTTPVTPIPHVPGMP-GPGSLTPQMPLLPP---- 1458
                       |:..    :||.||..|  .:..|..|:..:...| ...|:||.:...||    
 Frog  1064 LQEKACLSHQLPVLP----HPLILPKQS--SELFPSQPLSDILSAPFSLPSVTPSVFHRPPIALL 1122

  Fly  1459 PPQQLQ----------------------LPIPSSRGRSPNRKQP--------SPLLLGGGSGELK 1493
            .|..||                      ||.|.|...||....|        :|..:.|...:||
 Frog  1123 HPDHLQIPHHLNEQTMGTSFRQLPPYVHLPYPGSSPFSPTLFIPVQPQFALSTPTEIEGHYSQLK 1187

  Fly  1494 A-LSPFGGVQNVPSE---FSRQPPTPAQRQALQWNSKE-------------APKKAPFNFLRMAD 1541
            : :.|..||.:|...   ||.....|:........|.:             .|.:...:...:..
 Frog  1188 SVIPPPIGVSSVSPHKDYFSEALHCPSHSPLTSEPSSQGVTVHSDPVVSLVVPVRLQTHMPSIGS 1252

  Fly  1542 NVKTTEPE--VRHFN----------LENVISGKQQE--LPLTPLHVD----TPNGNAP---EETS 1585
            .:.||..:  |.|.:          |||...|....  ..:.|:|.|    ||....|   .||:
 Frog  1253 AMYTTLSQILVTHSHCSPSALVIQRLENQSEGSHGSNLAHILPVHQDNLLQTPYLRVPFTKVETT 1317

  Fly  1586 ---PVASASASA------------KSKFLRPT-SLPLKPGTFTPKR------------------- 1615
               |:||:|.||            ..:.|.|. ||.|...|...||                   
 Frog  1318 HYMPLASSSESALGSDLSSASVGGSKRMLSPAGSLELTMETQQQKRVKEENVPEEGGHCEMLKAQ 1382

  Fly  1616 ----------------------------HHGITPTANTLPLISPETPRPSK------------SC 1640
                                        |...:|.|::..| ||....||.            ||
 Frog  1383 DEGRTVSTDTVVSLAKGRLEQLPSCQAIHEDSSPKASSKSL-SPTLAGPSHTKSPEEYKEQIYSC 1446

  Fly  1641 ---------------------------VQLYLNG--------HAYTYLGLKCSTKMFYCTVNCPQ 1670
                                       |.||:.|        ...|:..|..:|.:.:|.:|..:
 Frog  1447 KITVKTEHPEELVEPLSTYTSLSTRVPVNLYVPGGSEVTETKKVQTFPTLHTTTNVSWCYLNYVK 1511

  Fly  1671 PSYVAGM-HKLSMYSVWQVCEENQPHPLGFKLKQVMALYDSRQRMLGNGSSTAMAGSGKLSYNLV 1734
            |::.... .:.|:|..|.:...| |:..|...:..::|..|:|:                     
 Frog  1512 PNHAQQTDRRASVYGSWCISLYN-PNLPGISTRAALSLLRSKQK--------------------- 1554

  Fly  1735 ASQQIVSSPSTSSTSSAFYQGPLKTPPTVTIAALSEANVAAKANEEAQAKKLETSPSGQP----- 1794
            .|.:|.::..|:.:.:     .|..|..|....::||::..:..:|....:.|....|:|     
 Frog  1555 TSTEIYTTADTTHSDT-----DLVVPSRVRKPKMTEAHLPPRVQKEVPNAEKEEDKRGKPEDTGP 1614

  Fly  1795 ------------LVGGYESHEDYTYIRGRGRGRYVCSECGIRCKKPSMLKKHIRTHTDVRPFTCS 1847
                        ..|||:|:|:|.|:||||||:|||.|||||||||||||||||||||:||:.|.
 Frog  1615 TVRRSEPARIRIFEGGYKSNEEYVYVRGRGRGKYVCEECGIRCKKPSMLKKHIRTHTDLRPYVCK 1679

  Fly  1848 HCNFSFKTKGNLTKHMQSKTHFKKCIELGINPGPMPPDSEFLDVD---MDFDQQSSTSAGGRTSS 1909
            ||||:|||||||||||:||.|.|||.|||:    :||....||.:   .|...|.|........|
 Frog  1680 HCNFAFKTKGNLTKHMKSKAHSKKCQELGL----LPPSQAELDAEEGTSDERWQDSDLLEEHQFS 1740

  Fly  1910 MAGESDSDDYSDNESESSDTDESKSRQKEH----------EAARGLLSLSMTPPIPQSVSPYPQL 1964
            ...:||.|:.||.|.:..: ||.:|::::|          |..:...:...:|....|.:|:|.:
 Frog  1741 DFEDSDDDEDSDEEDDEEE-DEEESQEEKHPSPTVRDSPNEPTQDPETAGSSPAYQFSPNPFPTV 1804

  Fly  1965 Q---------DTPLPAA---------SPANSI-GSSGSQPKR---LVCSFTSPK--------PPF 1999
            :         ...|||:         ||...: |.|...|.|   |....||||        .|.
 Frog  1805 EAPEKDNRARSFDLPASRDTLSCRRWSPGKEVSGCSRPGPSRRHLLQKRETSPKCFSTTGCPSPR 1869

  Fly  2000 DYQKQEQYYSNPEESKPKRSVANEESAPMDLTKPRGSILLISPSPVSVP--AHDLPKSQAQQMHD 2062
            ......|..::.:|..|.|.::....:|.....||   ..:||...:.|  .|..|..:.     
 Frog  1870 RGMSPCQRLASAKEVSPLRCISPRHLSPHRDLSPR---TYMSPERGASPPVRHISPSREL----- 1926

  Fly  2063 VIFGTSGNESGFMKTLISVSDKVRISAEMEEQAKHEAEGEDVQ------LQTYIK---------- 2111
                     :|...|.:...        :....::.:.|.|.|      .||:||          
 Frog  1927 ---------TGLQCTTLRPG--------LASPPRYASPGRDEQQLSRSETQTHIKVQQGFFSSLA 1974

  Fly  2112 ------EHALHQAKIKQSQFSRSYLINTLYTAASP--VMSSSSTLFTANSRPVMSVNEVPSIEVH 2168
                  |.|.::.|:..|.|  ..::..|.:..:|  :..|:..|||          .:|....|
 Frog  1975 LPHRTSEAACNKQKLGPSNF--PVMLRPLCSQLTPHYLARSAENLFT----------HLPLHSQH 2027

  Fly  2169 EVKTP------EAIESPRSAPEQAPVILAQIAQEENEEPNIAEPHNANLPAA----VQQPDVNEF 2223
            ..:||      ..|:..::.|...|.:|.|         :..||...:|.|.    ..|.:.:|.
 Frog  2028 LQRTPYPMIPIGGIQMVQARPSPHPELLGQ---------SFFEPQPGDLEAVPFEQQHQEENDEQ 2083

  Fly  2224 TGVLGNPTA-----PPTSSVTATSVSTTTAAPVAPSSTANSTQPAQRTVIVGEDGFKSSTP---- 2279
            ........|     ||.|          ||..|:||||...|               :|||    
 Frog  2084 IRTSRKEEAKDRVIPPIS----------TAPTVSPSSTYCQT---------------ASTPPQPE 2123

  Fly  2280 -TSKSGDL---QHVSYG 2292
             :....||   :||..|
 Frog  2124 MSQAETDLCHGEHVGEG 2140

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shnNP_001260883.1 C2H2 Zn finger 486..506 CDD:275368 15/19 (79%)
zf-H2C2_2 499..523 CDD:290200 16/23 (70%)
C2H2 Zn finger 514..536 CDD:275368 14/21 (67%)
zf-C2H2 1816..1838 CDD:278523 20/21 (95%)
C2H2 Zn finger 1818..1838 CDD:275370 18/19 (95%)
zf-H2C2_2 1830..1855 CDD:290200 19/24 (79%)
zf-C2H2 1844..1868 CDD:278523 18/23 (78%)
C2H2 Zn finger 1846..1868 CDD:275370 18/21 (86%)
zf-C2H2 2307..2328 CDD:278523
C2H2 Zn finger 2308..2328 CDD:275368
zf-C2H2_jaz 2333..2359 CDD:288983
C2H2 Zn finger 2336..2358 CDD:275368
C2H2 Zn finger 2381..2403 CDD:275368
hivep3XP_012812809.1 C2H2 Zn finger 168..188 CDD:275368 15/19 (79%)
zf-H2C2_2 181..205 CDD:404364 16/23 (70%)
C2H2 Zn finger 196..216 CDD:275368 13/19 (68%)
zf-C2H2 1648..1670 CDD:395048 20/21 (95%)
C2H2 Zn finger 1650..1670 CDD:275370 18/19 (95%)
zf-H2C2_2 1662..1687 CDD:404364 19/24 (79%)
C2H2 Zn finger 1678..1696 CDD:275370 15/17 (88%)
PHA03247 <1770..2137 CDD:223021 84/437 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 54 1.000 Domainoid score I11036
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm48789
Panther 1 1.100 - - LDO PTHR45944
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.100

Return to query results.
Submit another query.