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Protein Alignment CG12391 and Zkscan2

DIOPT Version :10

Sequence 1:	NP_610639.1	Gene:	CG12391 / 36170	FlyBaseID:	FBgn0033581	Length:	587	Species:	Drosophila melanogaster
Sequence 2:	NP_001419304.1	Gene:	Zkscan2 / 368120	RGDID:	1359568	Length:	960	Species:	Rattus norvegicus

Alignment Length:	550	Identity:	100/550 - (18%)
Similarity:	170/550 - (30%)	Gaps:	232/550 - (42%)

- Green bases have known domain annotations that are detailed below.

  Fly   158 EDEDDVEKPEDEDGTEEGDEA-------------------IEEDEDALDEDEDPNEEVEEIEPDF 203
            ||.|.:..||....:.|..:|                   :||:|.|.|.|.|      |:..:|
  Rat   414 EDMDALLNPEAHTSSTERPKAVISLPLKRTAVSAKEQVSLVEEEEGAEDSDGD------EVGIEF 472

  Fly   204 ETGTDAEG-----ELITG-----DEPGDLADVPIRERKKEEPVD--------------------- 237
            ...::...     :.::|     :|.....|: ::|.:..|.:.
  Rat   473 VRKSEIRAAPILFQNLSGVHWGYEETKTFLDI-LQETRFYEALQACHRKSKLYGVVAEQLRECGF 536

  Fly   238 ---EDQCRVCTSKEEL--------------VCLFKKQIDATPADMLLVICPNVSILPKDFMPQFI 285
               .:|||  |..:.|              .|.|.|::||      ||.| ..:.||.:
  Rat   537 LRTPEQCR--TKFKSLQKSYRKVKNGHVLESCAFYKEMDA------LVNC-RTAALPTN------ 586

  Fly   286 CTKCMGSLTIAIQLRKQLETTDQELRKRLSRSKNKVRRPRGYVVID--APVT----DSSED---- 340
                                |.:|: ..|||.:      ||::.::  .|.|    :||::
  Rat   587 --------------------TSEEI-PSLSRQE------RGHIEVEPQEPTTWEPEESSQEAVLE 624

  Fly   341 --------EDELDDEFKVSDVAGTTSADSDSADSD------------DSEKEK---KKPGPRGRP 382
                    |:|:.:|.:....||...:.:|....:            |:|..:   :||
  Rat   625 DSGSERMSEEEITEEPEFEGSAGLPQSPTDFEIGNIIKEAPTQVIFKDTESHRALIEKP------ 683

  Fly   383 RKKPLKRGTDSDGEPSSAQKKK-------------------YQPSSTAS--------VG------ 414
                 ||....:..||...|::                   .||..|..        ||
  Rat   684 -----KRFVSQNTNPSKYGKRECFSGRHWENLQGVRQGKLMSQPRDTGKAVVHQRPFVGRRPYRL 743

  Fly   415 -----------------------PFECPNCDLTFSRKQSYVLHRKTH--ERIEHACPICGKKFKV 454
                                   |::|..|...|.|.:|.:.|::.|  |: ...|..|||.|..
  Rat   744 LKYGENFGRSARLVCRMTHQKENPYKCGVCGKCFGRSRSLIRHQRIHTGEK-PFKCLDCGKSFND 807

  Fly   455 EWAYKTHMQRHEQERAHFRCELCPKIFRLRAELKHHMAQRHDEHGFIYECKRCQRTFLTQQRLQR 519
            ...:..|::.|..|:. :||..|.|.|...:.|..|......|..  |:|:.|.::|........
  Rat   808 SSNFGAHLRIHTGEKP-YRCRECGKCFSQSSSLIIHQRTHTGEKP--YQCEECGKSFTNSSHFSA 869

  Fly   520 HQAV----------GCQRHKEDSVRIKEEQ 539
            |:..          .|::...:..|.:|.:
  Rat   870 HRRAHTGENPYKCGDCEKSFNNCTRFREHR 899

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.