DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG13229 and dmsr-4

DIOPT Version :9

Sequence 1:NP_001260880.1 Gene:CG13229 / 36168 FlyBaseID:FBgn0033579 Length:414 Species:Drosophila melanogaster
Sequence 2:NP_001368505.1 Gene:dmsr-4 / 183924 WormBaseID:WBGene00017038 Length:386 Species:Caenorhabditis elegans


Alignment Length:368 Identity:107/368 - (29%)
Similarity:174/368 - (47%) Gaps:62/368 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    72 YNSIHGYVSLMICIFGTIANILNIMVLTRKEMAKTPINNILKWLAVADMFVMLEYIPYTSYQYIY 136
            |...|.|..|.|||.|..:|.::|.||:|..|.:..:|::|..:|..|:..|..|..|......|
 Worm    38 YTYFHRYACLFICIVGVFSNAIHIAVLSRPRMRRCAVNSVLTAVAFCDVITMTSYSIYLMRFRFY 102

  Fly   137 MGPGEKD--LSYTWAVCLLVHMHFTQILHTISIGLTVTLAVWRYVAIRHPNGGCANFLLAHSR-- 197
                |.|  .||.|.|.|..|:..:..||.|::.:...||..|:.|:.:          .||:  
 Worm   103 ----ETDHGYSYIWLVFLKFHVWSSMTLHAITLYMGGALAFIRWQALGN----------IHSKWL 153

  Fly   198 ------EAILLPFILSPILCLPT---YFVFQVR----ETYDVDKV--------NSEAMYHVYFDK 241
                  :...:..::..|:||||   :.::::.    ||..|.:|        ..|..|.:.|..
 Worm   154 QPRNSWQLFGVVSVVLSIVCLPTLVLHKIYEIESPEIETSTVSEVLRLSGQSIPKEVRYSLNFST 218

  Fly   242 DS-VLYRFNFWIHSVLIKLLPCGILIVISAVLMHVLCEASRRRLKLRDYNNPAKYAIQLNLNETK 305
            .| ..::||.|:.::::|.:||.:|:..:..|:..|.:...:|..|        |:.....:..|
 Worm   219 YSCAFFKFNLWMLAIVLKAIPCALLLWFTIALVVKLRQTDEKRNYL--------YSKSFRKHVKK 275

  Fly   306 SKKPPRCDRRNDRTTLLLVAVLVLFLITEFPQGLLGLLSGVMEKCFFAHCYPPFGELMDLLALIN 370
            :..|       ||||.:|:.:||:||:||.|||.|.||:|:.......:.|....||:|.|:|||
 Worm   276 TTVP-------DRTTYMLIIMLVVFLVTELPQGFLALLNGLYTGDVNIYIYKNLSELLDFLSLIN 333

  Fly   371 AAVGFVLYGLMSKQFRTTFRSLFMK-----RHFGSTEMTRLTR 408
            .:|.|:||.:||.::|.||..:.::     |:.|  |..||.|
 Worm   334 CSVDFLLYCVMSSRYRQTFGHMLIRVESWLRNHG--ERRRLAR 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG13229NP_001260880.1 7tm_4 78..393 CDD:304433 99/340 (29%)
dmsr-4NP_001368505.1 7tmA_FMRFamide_R-like 40..352 CDD:410630 98/340 (29%)
TM helix 1 42..66 CDD:410630 11/23 (48%)
TM helix 2 75..97 CDD:410630 7/21 (33%)
TM helix 3 117..139 CDD:410630 5/21 (24%)
TM helix 4 160..176 CDD:410630 3/15 (20%)
TM helix 5 225..248 CDD:410630 7/22 (32%)
TM helix 6 283..305 CDD:410630 12/21 (57%)
TM helix 7 320..345 CDD:410630 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_2BWNV
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG28978
OrthoDB 1 1.010 - - D343117at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14331
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR46273
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X861
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
98.980

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