DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment BBS4 and sxc

DIOPT Version :10

Sequence 1:NP_610636.1 Gene:BBS4 / 36167 FlyBaseID:FBgn0033578 Length:486 Species:Drosophila melanogaster
Sequence 2:NP_523620.1 Gene:sxc / 35486 FlyBaseID:FBgn0261403 Length:1059 Species:Drosophila melanogaster


Alignment Length:439 Identity:92/439 - (20%)
Similarity:160/439 - (36%) Gaps:113/439 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 GLIDREEGNHIEALRHLQKSAELNPRNIETYKEIGRTLYIMGRFSQALGVFREAEQRSSRQDHEI 138
            |.:...:|....|:.|.:|:..|:|..::.|..:|..|.....|.:|:..:..|...|  .::.:
  Fly   227 GCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALNLS--PNNAV 289

  Fly   139 YHYLGELLYRAATTQSQKDVASQQQDEARTYFE-----LAVQSGRKL--------ESYVRLAELY 190
            .|  |.|                    |..|:|     ||:.:.|:.        ::|..||...
  Fly   290 VH--GNL--------------------ACVYYEQGLIDLAIDTYRRAIELQPNFPDAYCNLANAL 332

  Fly   191 RKDKQYQKAIEILENCLHLTPENSEVL-------------IEISVLYLKINET----QKAHDRLA 238
            ::..|.::|.:.....|.|...:::.|             .|.:.||||..|.    ..||..||
  Fly   333 KEKGQVKEAEDCYNTALRLCSNHADSLNNLANIKREQGYIEEATRLYLKALEVFPDFAAAHSNLA 397

  Fly   239 EVVSIERKCSPKGLLAFGAILQSRNDIDGALSKYSQIANAEPEIAELWNNIGLCFFKKQKFIVAI 303
                              ::||.:..:..||..|.:....:|..|:.::|:|....:.|....|:
  Fly   398 ------------------SVLQQQGKLKEALMHYKEAIRIQPTFADAYSNMGNTLKELQDVSGAL 444

  Fly   304 SSLRKSVWLSPLNYNALYNLSLIYIASEQYASAFHTLAAAINLRKDNAECYMLLGLCLRKLDDME 368
            ....:::.::|...:|..||:.|:..|.....|..:...|:.|:.|..:.|..|..||:.:.|..
  Fly   445 QCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIQSYRTALKLKPDFPDAYCNLAHCLQIVCDWT 509

  Fly   369 NAFVALERASSMATGQQGAGRNP------------------LVVLNFALFCYETGRLALSTEQYN 415
            :..:.:::..|:.|.|....|.|                  .:....|..|.|...: |..:.||
  Fly   510 DYDIRMKKLVSIVTEQLEKNRLPSVHPHHSMLYPLTHDCRKAIAARHANLCLEKVHV-LHKKPYN 573

  Fly   416 RFMSQAQDLLLPTEYKFQATKLKSLLRISNQGNGILLDSADMGESDLGH 464
             |:.:     |||         |..|||     |.|  |:|.|.....|
  Fly   574 -FLKK-----LPT---------KGRLRI-----GYL--SSDFGNHPTSH 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
BBS4NP_610636.1 TPR repeat 68..95 CDD:276809 5/20 (25%)
LapB 70..347 CDD:442196 60/302 (20%)
TPR repeat 100..130 CDD:276809 6/29 (21%)
TPR repeat 136..175 CDD:276809 8/43 (19%)
TPR repeat 179..209 CDD:276809 6/37 (16%)
TPR repeat 214..242 CDD:276809 11/44 (25%)
TPR repeat 249..277 CDD:276809 5/27 (19%)
BepA 281..423 CDD:443813 32/159 (20%)
TPR repeat 283..311 CDD:276809 5/27 (19%)
TPR repeat 316..346 CDD:276809 7/29 (24%)
TPR repeat 351..377 CDD:276809 5/25 (20%)
sxcNP_523620.1 TPR repeat 53..78 CDD:276809
TPR 80..318 CDD:440225 23/114 (20%)
TPR repeat 86..112 CDD:276809
TPR repeat 118..146 CDD:276809
TPR repeat 151..181 CDD:276809
LapB 219..486 CDD:442196 60/300 (20%)
TPR repeat 220..248 CDD:276809 5/20 (25%)
TPR repeat 255..282 CDD:276809 6/26 (23%)
TPR repeat 287..317 CDD:276809 9/51 (18%)
TPR repeat 322..350 CDD:276809 5/27 (19%)
TPR repeat 355..385 CDD:276809 6/29 (21%)
TPR repeat 390..418 CDD:276809 9/45 (20%)
TPR repeat 423..453 CDD:276809 5/29 (17%)
TPR repeat 458..486 CDD:276809 7/27 (26%)
Glyco_transf_41 505..1036 CDD:404688 26/119 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.