DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spn47C and srp-6

DIOPT Version :9

Sequence 1:NP_001163116.1 Gene:Spn47C / 36163 FlyBaseID:FBgn0033574 Length:382 Species:Drosophila melanogaster
Sequence 2:NP_504890.1 Gene:srp-6 / 179125 WormBaseID:WBGene00005647 Length:375 Species:Caenorhabditis elegans


Alignment Length:359 Identity:86/359 - (23%)
Similarity:166/359 - (46%) Gaps:34/359 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 NMMVSPAGARSAMTLVFMGAGGKSADELRSKLILGVSNKSEVAKQHAESWTDECSCAKKGVALRL 98
            :.:.||.....|::||.:.|.|::.||:|..|:.|.::  |..:||..:.:.....|:||..:.:
 Worm    33 SFVFSPLSIALALSLVHVAAKGETRDEIRKALLNGATD--EELEQHFSNISAGLLVAEKGTEVNV 95

  Fly    99 -----------VTRLYVNEEEKIRTDFNDMALEFFNAEAYSLNYLNPEDSVKKVNKWLEKHTFYT 152
                       :.:||:|:.:|:           :||.|..||:.:.|.|.:.:|.::.::|...
 Worm    96 ANHIFSRKTFTIKKLYLNDVKKL-----------YNAGASQLNFEDQEASAEAINNFVSENTKGH 149

  Fly   153 VRNLFTPEVFNSDSSVILVNSLFFRAKWNKIFPQQLTQIDDFWINPRQRMEVSMMRQIGQFR-YG 216
            ::.:..|:..:.:...:|.|:.:|:|.|...|.::.|...:|:.:...:.|...:......| |.
 Worm   150 IKKIINPDSISEELVAVLTNAFYFKANWQTKFKKESTYKREFFSSENSKRETEFLHSRNSNRKYS 214

  Fly   217 ESKKLKSQILQLPFERSNLTMMIILPTAIDGLPELEEKLGQLDMNEVAAKSLMKEVDVTIPKFRI 281
            |:.:.  |:|.||::.::..:.|.||....||.|..:.|..:.:.::.:.:....|::.:||::|
 Worm   215 ENGQF--QVLSLPYKDTSFALSIFLPKTRFGLSEALQNLDSVTIQQLMSNTSNTLVNIAMPKWKI 277

  Fly   282 ECTVDLKVPLQKMGINSVFDAGQADLSDLFEMKTPQKISEARHKVFLNVTEFGCEVAPEAEVQ-- 344
            |..:.|...|..:||...|    .|.:||........||:|.||..:.|.|.|...|....:.  
 Worm   278 ETALGLNRALMAVGIEKAF----TDSADLSNFADGIYISQAAHKALIEVDEDGTVAAAATTISFS 338

  Fly   345 -PEVLKKNPDRKFFKADRPFVFAIRDRKNVYFVG 377
             ..|.....:...|.||.||:|.:....:..|:|
 Worm   339 LTSVFIPAEEPIEFTADHPFLFILSKDNHPLFIG 372

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn47CNP_001163116.1 SERPIN 18..379 CDD:238101 86/359 (24%)
srp-6NP_504890.1 serpinL_nematode 16..374 CDD:381047 86/359 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E33208_3BBFJ
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D556621at33208
OrthoFinder 1 1.000 - - FOG0000050
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X28
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.920

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