DRSC/TRiP Functional Genomics Resources

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Protein Alignment polyph and skat-1

DIOPT Version :10

Sequence 1:NP_610631.1 Gene:polyph / 36161 FlyBaseID:FBgn0033572 Length:460 Species:Drosophila melanogaster
Sequence 2:NP_498989.1 Gene:skat-1 / 176271 WormBaseID:WBGene00010307 Length:460 Species:Caenorhabditis elegans


Alignment Length:453 Identity:97/453 - (21%)
Similarity:197/453 - (43%) Gaps:68/453 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 RSVEVPLTNCDAFISLLKCVIGTGILAMPLAFRCSGFVMGTVMSILLMILLTYSIHLLIADMTEC 104
            ||.:| :|...|.::|.|.:...|..::|.|::..|..:..|||.::..|..|..|:|:      
 Worm    32 RSGDV-ITPTRAVLTLSKSMFNAGCFSLPYAWKLGGLWVSFVMSFVIAGLNWYGNHILV------ 89

  Fly   105 CRRRRVPQVSMPEAVRIAYEEGP-----------KWINCFGRAAGFMTTCVLVFGQFLLCTVYLV 158
                |..|....::.|.|.:.|.           :::....:|..:.....::|.|..:|:|.::
 Worm    90 ----RASQHLAKKSDRSALDYGHFAKKVCDYSDIRFLRNNSKAVMYFVNVTILFYQLGMCSVAIL 150

  Fly   159 FVSKNFKE-IGDHYIERYNERYYVL--VACLLLLPLFMIRRLKYLVPLNLISNFLLYAGFALIMY 220
            |:|.|... :|||.....:::..::  |:...:|...|...::.:....|:|:.....|.|:||.
 Worm   151 FISDNLVNLVGDHLGGTRHQQMILMATVSLFFILLTNMFTEMRIVSFFALVSSVFFVIGAAVIMQ 215

  Fly   221 YLFNGLPNINDREMVTPPVEWIEFIAIAAF--SLTAVG----------SMLVVEAHMAHPQSYLG 273
            |            .|..|.:|.:..|...|  ::|.:|          .:|.:|..:.:|.::|.
 Worm   216 Y------------TVQQPNQWDKLPAATNFTGTITMIGMSMYAFEGQTMILPIENKLDNPAAFLA 268

  Fly   274 LFGVLNLAVLFILLSNMFFGIIGYWRFGDNVHASITLNIPQDEILSQFIKVFIASGIFLSYPLNG 338
            .||||:..::.........|..||..|||::..:||.|:|::.:.|. :.||:.....|...:..
 Worm   269 PFGVLSTTMIICTAFMTALGFFGYTGFGDSIAPTITTNVPKEGLYST-VNVFLMLQSLLGNSIAM 332

  Fly   339 FVVITVMFSDYENSEPRGRY--------RTLIEYVVRLLFLFLTGAVAIGVPNLAALTELEGAFS 395
            :||..:.|:.:     |.::        :.|.:...|:.::.:|..:|:.:|.|..:..|.|..|
 Worm   333 YVVYDMFFNGF-----RRKFGARFPNVPKWLSDKGFRVFWVLVTYLMAVLIPKLEIMIPLVGVTS 392

  Fly   396 LSNLNLLCPALIDVFLNYN-----VGYGRLMWKLIRDILLILIGLIFGIVGCTVALMQLIRDF 453
            .:...|:.|...::...:.     :.|.:.|.|:..:::::.||:...|.|....:..:|:.|
 Worm   393 GALCALIFPPFFEMITFWTDWKGLLTYRQRMTKIFINLVVMAIGVFAIIAGVYTNIHAIIQSF 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
polyphNP_610631.1 SLC5-6-like_sbd 50..407 CDD:444915 84/390 (22%)
skat-1NP_498989.1 Aa_trans 35..446 CDD:279788 93/439 (21%)

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