Protein Alignment Rpb5 and AT3G16680

DIOPT Version :9

• Sequence 1: NP_001260878.1
• Gene: Rpb5 / 36160
• FlyBaseID: FBgn0033571
• Length: 210
• Species: Drosophila melanogaster
• Sequence 2: NP_188290.1
• Gene: AT3G16680 / 820920
• AraportID: AT3G16680
• Length: 87
• Species: Arabidopsis thaliana
• Alignment Length: 79
• Identity: 32/79 - (40%)
• Similarity: 50/79 - (63%)
• Gaps: 4/79 - (5%)

  Fly    87 IKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMA---PKYILEQFLESELLINITEHELVPEH 148
            :|.|..:::..|:.|||:||| .:...::|:||.:.   |.:.:|.|.|.||::|:.||..||||
plant     1 MKKYIDQLKSANVFRAILVVQ-DIKAFSRQALVFLGAVYPIFHIEVFQEKELIVNVKEHVFVPEH 64

  Fly   149 VVMTVEEKQELLSR 162
            ..:|.||||:.|.|
plant    65 QALTTEEKQKFLER 78

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpb5	NP_001260878.1	PLN03111	1..210	CDD:215582	32/79 (41%)
AT3G16680	NP_188290.1	RNA_pol_Rpb5_N	<1..>78	CDD:392201	31/77 (40%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG2012
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D1255823at2759
OrthoFinder	1	1.000	-	-		FOG0003717
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR10535
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	5	4.920