Protein Alignment Polr2E and RPB5D

DIOPT Version :10

• Sequence 1: NP_610630.1
• Gene: Polr2E / 36160
• FlyBaseID: FBgn0033571
• Length: 210
• Species: Drosophila melanogaster
• Sequence 2: NP_181665.1
• Gene: RPB5D / 818732
• AraportID: AT2G41340
• Length: 218
• Species: Arabidopsis thaliana
• Alignment Length: 211
• Identity: 65/211 - (30%)
• Similarity: 121/211 - (57%)
• Gaps: 20/211 - (9%)

  Fly     6 ETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVA-HNDDPT 69
            |.:|.:..|:|.|::..||||.|:.::::.:|:||:.::|:.|.      .||:.:.| |..|.:
plant    20 ECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRALYGEHPD------VDLLRISAKHRFDSS 78

  Fly    70 DQMFVFFPEEPKIGIKTIKTYCTR------MQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILE 128
            .::.|.|     .|...:|....|      :..|||...|:|:|..:|..|.:::...:.|  :|
plant    79 KKISVVF-----CGTGIVKVNAMRVIAADVLSRENITGLILVLQSHITNQALKAVELFSFK--VE 136

  Fly   129 QFLESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKI 193
            .|..::||:|:::|.|.|:|.|:..:||:.||.::.::|..|.|:.:.||:.||:||:.|||:|:
plant   137 LFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQLPRLSSKDPIVRYYGLETGQVMKV 201

  Fly   194 IRSSETAGRYISYRLV 209
            ....|.:..:::||.|
plant   202 TYKDELSESHVTYRCV 217

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Polr2E	NP_610630.1	PLN03111	1..210	CDD:215582	65/211 (31%)
RPB5D	NP_181665.1	PLN03111	14..217	CDD:215582	64/209 (31%)