Protein Alignment Rpb5 and polr2eb

DIOPT Version :9

• Sequence 1: NP_001260878.1
• Gene: Rpb5 / 36160
• FlyBaseID: FBgn0033571
• Length: 210
• Species: Drosophila melanogaster
• Sequence 2: NP_001003564.1
• Gene: polr2eb / 445170
• ZFINID: ZDB-GENE-040801-83
• Length: 210
• Species: Danio rerio
• Alignment Length: 209
• Identity: 178/209 - (85%)
• Similarity: 191/209 - (91%)
• Gaps: 0/209 - (0%)

  Fly     1 MDDEAETYKLWRIRKTIMQLSHDRGYLVTQDELDQTLEQFKEMFGDKPSEKRPARSDLIVLVAHN 65
            ||||.|||:||:||||||||.||||||||||||||||::|:..|||||||.||.|:||.||||||
Zfish     1 MDDEEETYRLWKIRKTIMQLCHDRGYLVTQDELDQTLDEFRSQFGDKPSEGRPRRNDLTVLVAHN 65

  Fly    66 DDPTDQMFVFFPEEPKIGIKTIKTYCTRMQEENIHRAIVVVQGGMTPSAKQSLVDMAPKYILEQF 130
            ||||||||||||||||:||||||.||.|||||||.|||:|||.||||||||||||||||||||||
Zfish    66 DDPTDQMFVFFPEEPKVGIKTIKMYCQRMQEENITRAIIVVQMGMTPSAKQSLVDMAPKYILEQF 130

  Fly   131 LESELLINITEHELVPEHVVMTVEEKQELLSRYKLKENMLMRIQAGDPVARYFGLKRGQVVKIIR 195
            |:.|||||||||||||||:|||.||..|||:||||||:.|.||||||||||||||||||||||||
Zfish   131 LQQELLINITEHELVPEHIVMTKEEVTELLARYKLKESQLPRIQAGDPVARYFGLKRGQVVKIIR 195

  Fly   196 SSETAGRYISYRLV 209
            .||||||||:||||
Zfish   196 PSETAGRYITYRLV 209

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rpb5	NP_001260878.1	PLN03111	1..210	CDD:215582	178/209 (85%)
polr2eb	NP_001003564.1	PLN03111	1..209	CDD:215582	176/207 (85%)
		RNA_pol_Rpb5_N	4..92	CDD:281816	72/87 (83%)
		RNA_pol_Rpb5_C	138..209	CDD:279524	60/70 (86%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170588229
Domainoid	1	1.000	162	1.000	Domainoid score	I3957
eggNOG	1	0.900	-	-		E1_COG2012
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H2018
Inparanoid	1	1.050	361	1.000	Inparanoid score	I2163
OMA	1	1.010	-	-		QHG54766
OrthoDB	1	1.010	-	-		D1255823at2759
OrthoFinder	1	1.000	-	-		FOG0003717
OrthoInspector	1	1.000	-	-		otm25095
orthoMCL	1	0.900	-	-		OOG6_101049
Panther	1	1.100	-	-	LDO	PTHR10535
Phylome	1	0.910	-	-
RoundUp	1	1.030	-	avgDist	Average_Evolutionary_Distance	R1175
SonicParanoid	1	1.000	-	-		X3076
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	1	0.960	-	-
ZFIN	0	0.000	Not matched by this tool.
	16	15.800