DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12942 and Sry-delta

DIOPT Version :10

Sequence 1:NP_610628.2 Gene:CG12942 / 36158 FlyBaseID:FBgn0033569 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster


Alignment Length:580 Identity:122/580 - (21%)
Similarity:184/580 - (31%) Gaps:201/580 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 CRACLSVD---------RKTVQLNAEVPNLQKTRTYAQS-LKQC--TNLDLRVISPGGYLWPMQI 74
            |..|.:||         .:...|:|:||:.|||.:...: |..|  |.|||:   ||.     ::
  Fly     4 CFFCGAVDLSDTGSSSSMRYETLSAKVPSSQKTVSLVLTHLANCIQTQLDLK---PGA-----RL 60

  Fly    75 CVRCCRALE------VAMHFVEMALESNLKLQAEAKSVKLPSPTGELKRKASNETIPWNQFSQEF 133
            |.||.:.|.      |.:...:..|.:.||              |.||              .||
  Fly    61 CPRCFQELSDYDTIMVNLMTTQKRLTTQLK--------------GALK--------------SEF 97

  Fly   134 EQFVEGYEGPIEENVLYMRGTKVPRLDVDASSSSET------APKEDEVILFDVKYDTNDLEEED 192
            |....|.:..:||       .::|:.||:..:.:|.      ..|:.|....::|.:..|.|||:
  Fly    98 EVPESGEDILVEE-------VEIPQSDVETDADAEADALFVELVKDQEESDTEIKREFVDEEEEE 155

  Fly   193 ENDGSDAKNNETFFENSITPGESVMVVSVAEKAVENNNNYNFNNKNGDVTDEECDLIQRALEMTL 257
            ::|..|                                  .|..::.||.|.|      || ...
  Fly   156 DDDDDD----------------------------------EFICEDVDVGDSE------AL-YGK 179

  Fly   258 NDDGCSQSPKNEASNETQLKSNGIEVSSPLFIKLATTSSTTGNIPILKCNICQYTHTDAEQLKIH 322
            :.||..:..|.....|                                |..|...:....||:.|
  Fly   180 SSDGEDRPTKKRVKQE--------------------------------CTTCGKVYNSWYQLQKH 212

  Fly   323 YKSIHKISMMEDDIIGLNKNQNFKCRPCNSYETKDRSEMQKHLIDHHKIDGDFEMYCYMQANCP- 386
            ....|            :|..|..|..|.... :|...::.|:..|   :|..|..|   ..|| 
  Fly   213 ISEEH------------SKQPNHICPICGVIR-RDEEYLELHMNLH---EGKTEKQC---RYCPK 258

  Fly   387 ACDRIFKDQRSARKHYTRVHTPVQIAVSPTESYACTACDKVFNQKASLHSHQ-RFCQVKDVVHCS 450
            :..|.....|..|.|:.:            :.|.|..|...|:|...|::|: |....::.:.||
  Fly   259 SFSRPVNTLRHMRMHWDK------------KKYQCEKCGLRFSQDNLLYNHRLRHEAEENPIICS 311

  Fly   451 FCDQQFNSMRKYELHLQQLHAVETVHECEICRRSFKSAETLTMHRKRH----------------- 498
            .|:..|.|.:.:..|..........|.|.:|.:||....||.||.|.|                 
  Fly   312 ICNVSFKSRKTFNHHTLIHKENRPRHYCSVCPKSFTERYTLKMHMKTHEGDVVYGVREEAPADEQ 376

  Fly   499 ---SERHYQCGKCSLNYVNSAELRVHYERAHVNEEPVSCLTCGNQFQNMTLLREHEQRSH 555
               .|.|..        |:.:|..|....:..:|....||.|...|:|...|..|.|..|
  Fly   377 QVVEELHVD--------VDESEAAVTVIMSDNDENSGFCLICNTNFENKKELEHHLQFDH 428

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12942NP_610628.2 zf-AD 21..100 CDD:462262 27/95 (28%)
C2H2 Zn finger 385..406 CDD:275368 6/21 (29%)
C2H2 Zn finger 421..470 CDD:275368 13/49 (27%)
C2H2 Zn finger 449..466 CDD:275371 5/16 (31%)
C2H2 Zn finger 478..498 CDD:275368 9/19 (47%)
C2H2 Zn finger 505..526 CDD:275368 3/20 (15%)
C2H2 Zn finger 534..555 CDD:275368 8/20 (40%)
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 44/185 (24%)
C2H2 Zn finger 225..245 CDD:275368 4/20 (20%)
C2H2 Zn finger 253..273 CDD:275368 6/22 (27%)
C2H2 Zn finger 281..301 CDD:275368 6/19 (32%)
C2H2 Zn finger 310..327 CDD:275370 5/16 (31%)
C2H2 Zn finger 339..359 CDD:275368 9/19 (47%)

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