DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12942 and zf30C

DIOPT Version :10

Sequence 1:NP_610628.2 Gene:CG12942 / 36158 FlyBaseID:FBgn0033569 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_477301.1 Gene:zf30C / 34292 FlyBaseID:FBgn0270924 Length:777 Species:Drosophila melanogaster


Alignment Length:635 Identity:134/635 - (21%)
Similarity:210/635 - (33%) Gaps:179/635 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 PMQICVRCCRALEVAMHFVEMALESNLKLQAEAKSVKLPSP--------TGELKRKA-------- 119
            ||: | :||        :...:..|||.....::......|        .|..|.||        
  Fly   131 PME-C-KCC--------YTRFSSASNLSKHRRSRPDTCGQPEYDSPGSSDGMKKHKAFRKKDRNR 185

  Fly   120 --------------SNETIPW-----NQFSQEFEQFVEGYEGP-IEENVLYMRGTKVPRLDVDAS 164
                          |::.||.     .:..||.:....|.|.| .|.|        ....|.|||
  Fly   186 DSDDEDTTSEESEDSDDDIPLASRLKTKLKQESQNSDSGDECPDFEPN--------NSEDDADAS 242

  Fly   165 SSSETAPKEDEVILFD------------VKYDTNDL--EEEDE------NDGSDAKNNETFFENS 209
            ......|...:|..||            ||.::.|:  .|:|:      |:|...|..|:.   .
  Fly   243 GFQLPPPAMVKVEAFDEEDFEYQDASMYVKTESTDIFSNEKDKLLDVLLNEGDGLKPFESL---K 304

  Fly   210 ITPGESVM-------VVSVAEKAVENNNNYNFN-----NKNGDVTDEECDLIQRALE-----MTL 257
            :..|..::       :|.|||:.|.....:...     .|.|....|:..:::|...     .:.
  Fly   305 VEQGAGILDEIAAVPLVEVAEEDVLELRGHQMEKPPGPRKRGRPPKEKIPVVKRKYRKRNAPRSP 369

  Fly   258 NDDGCSQSPKNEAS-NETQLKS-----NGIEVSSPLFIKLATTSSTTGNIPILKCNICQYTHTDA 316
            :.|..|.:||..|. ::.:||.     |.:|.|                   .||..|...:...
  Fly   370 SPDDSSGTPKRVAKISKKELKERLKMINKMEKS-------------------WKCPHCVKIYHIR 415

  Fly   317 EQLKIHYKSIHKISMME-------DDIIGLNKNQNFKCRPCNSYETKDRSEMQKHLIDHHKIDGD 374
            :..:.|.:..||::..|       .|:......:.|||..|:....     ::|.|:.|.|:.|:
  Fly   416 KPYEKHLRDDHKLNEAEMKEIFKDVDVHAKLDEEVFKCPICSKIYL-----VEKRLVTHMKVHGE 475

  Fly   375 -----FEMYCYMQANCPACDRIFKDQRSARKHYTRVHTPVQIAVSPTESYACTACDKVFNQKASL 434
                 |:..||       |:..|..:..|.:|....|         .|...|..|||......||
  Fly   476 DGKLTFKCPCY-------CNLFFATKEQATEHARAQH---------KELLYCEKCDKYMTGHDSL 524

  Fly   435 HSHQRFCQVKDVVHCSFCDQQFNSMRKYELHLQQLHAVETVHECEICRRSFKSAETLTMHRKRHS 499
            .:|:|               .|:|  |.|...||.:.:     |:.|.:.|....:|:.|.:...
  Fly   525 KNHER---------------NFHS--KKEPRSQQRNLI-----CDKCGKKFTGRTSLSDHVRSDC 567

  Fly   500 ER--HYQCGKCSLNYVNSAELRVHYERAHVNEEPVSCLTCGNQFQNMTLLREHEQRSHQKSKVWR 562
            .|  .|.|..|..:...:..|:.|. ..|..:.|..|..||..|:.....:.|.:..|...|.::
  Fly   568 GRLPLYGCSVCGKHLSTAGILKTHM-LLHKADTPYQCDKCGKTFKVKAQYKSHLKTRHTDYKPYK 631

  Fly   563 CEVCNFETKTRWRRRQHQYEHMDYP-YKCQKCTSEFADRSKFRQHSKKVH 611
            |.:|..|...|.....|...|.... :.|..|...|...|..:.| :|||
  Fly   632 CHLCPKEYPYRESLLTHMTVHTGIKRFLCNNCGKRFTCISNLQAH-RKVH 680

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12942NP_610628.2 zf-AD 21..100 CDD:462262 8/28 (29%)
C2H2 Zn finger 385..406 CDD:275368 4/20 (20%)
C2H2 Zn finger 421..470 CDD:275368 14/48 (29%)
C2H2 Zn finger 449..466 CDD:275371 4/16 (25%)
C2H2 Zn finger 478..498 CDD:275368 5/19 (26%)
C2H2 Zn finger 505..526 CDD:275368 4/20 (20%)
C2H2 Zn finger 534..555 CDD:275368 5/20 (25%)
zf30CNP_477301.1 C2H2 Zn finger 33..53 CDD:275368
C2H2 Zn finger 61..82 CDD:275368
C2H2 Zn finger 98..117 CDD:275368
C2H2 Zn finger 134..152 CDD:275368 6/26 (23%)
C2H2 Zn finger 511..532 CDD:275370 8/35 (23%)
COG5048 <523..>672 CDD:227381 39/171 (23%)
C2H2 Zn finger 546..566 CDD:275368 5/19 (26%)
C2H2 Zn finger 575..595 CDD:275368 4/20 (20%)
C2H2 Zn finger 603..624 CDD:275368 5/20 (25%)
C2H2 Zn finger 632..652 CDD:275368 5/19 (26%)
C2H2 Zn finger 660..680 CDD:275368 6/20 (30%)
Blue background indicates that the domain is not in the aligned region.

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