DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12942 and Ctcfl1

DIOPT Version :10

Sequence 1:NP_610628.2 Gene:CG12942 / 36158 FlyBaseID:FBgn0033569 Length:686 Species:Drosophila melanogaster
Sequence 2:NP_001309415.1 Gene:Ctcfl1 / 100360757 RGDID:2321501 Length:645 Species:Rattus norvegicus


Alignment Length:493 Identity:100/493 - (20%)
Similarity:159/493 - (32%) Gaps:157/493 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   168 ETAPKEDEVILFDVKYDTNDLE--------EEDEND------GSDAKNNE-TFFENSITPGESVM 217
            |..|::||    :.:..|::||        ||||.|      |:|.|... .|.|.....|:..:
  Rat   151 ENVPEDDE----ENQESTSNLEESTAPKKPEEDEKDQLLPQGGTDKKEERFLFVEMKPREGKDEI 211

  Fly   218 VVSVAEKAVENNNNYNFNNKNGDVTDEECDLIQRALEMTLNDDGCSQSPKNEASNETQLKSNGIE 282
            |::::..::|.                                  .|.|  .|:..|  .:.|.:
  Rat   212 VLTISHLSLEE----------------------------------QQDP--PAAKHT--SAPGAK 238

  Fly   283 VSSPLFIKLATTSSTTGNIPILKCNICQYTHTDAEQLKIHYKSIHKISMMEDDIIGLNKNQNFKC 347
            .:.|     .....|.|.....:|:.|.:|.:.......|.| ||                    
  Rat   239 AAKP-----KPQRQTKGRPRTFQCDTCPFTSSKLSTFNRHIK-IH-------------------- 277

  Fly   348 RPCNSYETKDRSEMQKHLIDHHKIDGDFEMYCYMQANCPACDRIFKDQRSARKHYTRVHTPVQIA 412
                       |:.:.||                   |..|.:.|:.....|.| ...||     
  Rat   278 -----------SDERPHL-------------------CHLCLKSFRTVTLLRNH-VNTHT----- 306

  Fly   413 VSPTESYACTACDKVFNQKASLHSHQRF------------CQVKDV-----------------VH 448
              .|..|.|..||..|.....|..|:|:            |:...|                 ..
  Rat   307 --GTRPYKCGDCDMAFVTSGELVRHRRYKHTHEKPFKCSLCKYASVEASKLKRHIRSHTGERPFQ 369

  Fly   449 CSFCDQQFNSMRKYELHLQQLHAVETVHECEICRRSFKSAETLTMH-RKRHSER--HYQCGKCSL 510
            ||.|........|.:.|: :.|:.|..:||..|...|..:.|:.:| .::|.|.  .::|..|:.
  Rat   370 CSQCAYASKDTYKLKRHM-RTHSGEKPYECPTCHARFTQSGTMKIHIAQKHGENVPKHECPHCAT 433

  Fly   511 NYVNSAELRVHYERAHVNE-EPVSCLTCGNQFQNMTLLREHEQRSHQKSKVWRCEVCNFETKTRW 574
            .....::||||....|.:. |.:.|..|...|.....|.:| ||:|:..|.::|:.|::..|...
  Rat   434 IIARKSDLRVHLRNLHGHSPEEIKCRYCPAAFHERYALLQH-QRTHKNEKKFKCKQCDYACKQER 497

  Fly   575 RRRQHQYEHM-DYPYKCQKCTSEFADRSKFRQHSKKVH 611
            ....|...|. :.|:.|..|...|..:.....|.:|.|
  Rat   498 CLTAHMRTHTGERPFSCLTCNKHFRQKQLLTVHLRKYH 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12942NP_610628.2 zf-AD 21..100 CDD:462262
C2H2 Zn finger 385..406 CDD:275368 5/20 (25%)
C2H2 Zn finger 421..470 CDD:275368 14/77 (18%)
C2H2 Zn finger 449..466 CDD:275371 4/16 (25%)
C2H2 Zn finger 478..498 CDD:275368 5/20 (25%)
C2H2 Zn finger 505..526 CDD:275368 6/20 (30%)
C2H2 Zn finger 534..555 CDD:275368 7/20 (35%)
Ctcfl1NP_001309415.1 C2H2 Zn finger 257..277 CDD:275368 5/20 (25%)
C2H2 Zn finger 285..305 CDD:275368 5/20 (25%)
zf-H2C2_2 298..322 CDD:463886 10/31 (32%)
C2H2 Zn finger 313..334 CDD:275368 7/20 (35%)
COG5048 336..>398 CDD:227381 9/62 (15%)
C2H2 Zn finger 342..362 CDD:275368 2/19 (11%)
C2H2 Zn finger 370..390 CDD:275368 5/20 (25%)
zf-H2C2_2 383..407 CDD:463886 7/24 (29%)
C2H2 Zn finger 398..415 CDD:275370 4/16 (25%)
C2H2 Zn finger 428..451 CDD:275368 7/22 (32%)
C2H2 Zn finger 458..478 CDD:275368 7/20 (35%)
zf-H2C2_2 470..495 CDD:463886 8/25 (32%)
zf-H2C2_5 484..508 CDD:404746 5/23 (22%)
C2H2 Zn finger 486..506 CDD:275368 4/19 (21%)
C2H2 Zn finger 514..532 CDD:275368 4/17 (24%)
Blue background indicates that the domain is not in the aligned region.

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