DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30020 and Sry-delta

DIOPT Version :10

Sequence 1:NP_610627.2 Gene:CG30020 / 36156 FlyBaseID:FBgn0050020 Length:1309 Species:Drosophila melanogaster
Sequence 2:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster


Alignment Length:415 Identity:92/415 - (22%)
Similarity:133/415 - (32%) Gaps:141/415 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   861 CPRCIRSFAAKTTLSRHLQ--RSHLVDTI-----IEMQTPHCGEAITTTMATSSSTISEPVNSVT 918
            ||||.:..:...|:..:|.  :..|...:     .|.:.|..||.|          :.|.|    
  Fly    61 CPRCFQELSDYDTIMVNLMTTQKRLTTQLKGALKSEFEVPESGEDI----------LVEEV---- 111

  Fly   919 VDGQHNEMMQTDVGAEKMTEALGNGDG--------NEEGGTDDGTGVKAEPAVPEEELDPVTLDA 975
                  |:.|:||    .|:|....|.        .||..|:    :|.|....|||.|.     
  Fly   112 ------EIPQSDV----ETDADAEADALFVELVKDQEESDTE----IKREFVDEEEEEDD----- 157

  Fly   976 ATAVTTTAIAAAISAAAAATATSLESPVATTASSSTTLFPTPTPFDFDYDIMRDEAQQSSPNIHD 1040
                                                           |.|   ||......::.|
  Fly   158 -----------------------------------------------DDD---DEFICEDVDVGD 172

  Fly  1041 VSKALSDNASSSCPINESYKLLSTTALETSPAKGLRSNSRLHRSSIHICKLCNQTFDELGKLVKH 1105
             |:||...:|..               |..|.|     .|:.:.    |..|.:.::...:|.||
  Fly   173 -SEALYGKSSDG---------------EDRPTK-----KRVKQE----CTTCGKVYNSWYQLQKH 212

  Fly  1106 EMELHSNTERSRWGYQHKCAICNTSYRTLTLLKFHMKRHSNR-KSQCKLCPKSFVTIAELERHTK 1169
            ..|.||...      .|.|.||....|....|:.||..|..: :.||:.|||||.......||.:
  Fly   213 ISEEHSKQP------NHICPICGVIRRDEEYLELHMNLHEGKTEKQCRYCPKSFSRPVNTLRHMR 271

  Fly  1170 AKHSKDKTLRCFMDGCRKTFA----FKHHLIRHQKASHLSTRYICPVCNKEEKSNVHLKNHMSVH 1230
             .|...|..:|  :.|...|:    ..:|.:||:...:   ..||.:||...||.....:|..:|
  Fly   272 -MHWDKKKYQC--EKCGLRFSQDNLLYNHRLRHEAEEN---PIICSICNVSFKSRKTFNHHTLIH 330

  Fly  1231 K-GEITYKCPKCDRSYLRRGRLVTH 1254
            | ....:.|..|.:|:..|..|..|
  Fly   331 KENRPRHYCSVCPKSFTERYTLKMH 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30020NP_610627.2 zf-AD 25..103 CDD:214871
C2H2 Zn finger 369..389 CDD:275368
C2H2 Zn finger 397..418 CDD:275368
C2H2 Zn finger 442..460 CDD:275368
C2H2 Zn finger 730..750 CDD:275368
C2H2 Zn finger 758..777 CDD:275368
C2H2 Zn finger 1089..1110 CDD:275368 6/20 (30%)
C2H2 Zn finger 1124..1144 CDD:275368 7/19 (37%)
C2H2 Zn finger 1151..1172 CDD:275368 8/20 (40%)
C2H2 Zn finger 1180..1203 CDD:275368 6/26 (23%)
C2H2 Zn finger 1210..1230 CDD:275368 6/19 (32%)
C2H2 Zn finger 1238..1254 CDD:275368 5/15 (33%)
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 47/163 (29%)
C2H2 Zn finger 225..245 CDD:275368 7/19 (37%)
C2H2 Zn finger 253..273 CDD:275368 8/20 (40%)
C2H2 Zn finger 281..301 CDD:275368 4/21 (19%)
C2H2 Zn finger 310..327 CDD:275370 5/16 (31%)
C2H2 Zn finger 339..359 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.

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