DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30020 and Sry-delta

DIOPT Version :9

Sequence 1:NP_610627.2 Gene:CG30020 / 36156 FlyBaseID:FBgn0050020 Length:1309 Species:Drosophila melanogaster
Sequence 2:NP_524581.1 Gene:Sry-delta / 43572 FlyBaseID:FBgn0003512 Length:433 Species:Drosophila melanogaster


Alignment Length:415 Identity:92/415 - (22%)
Similarity:133/415 - (32%) Gaps:141/415 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   861 CPRCIRSFAAKTTLSRHLQ--RSHLVDTI-----IEMQTPHCGEAITTTMATSSSTISEPVNSVT 918
            ||||.:..:...|:..:|.  :..|...:     .|.:.|..||.|          :.|.|    
  Fly    61 CPRCFQELSDYDTIMVNLMTTQKRLTTQLKGALKSEFEVPESGEDI----------LVEEV---- 111

  Fly   919 VDGQHNEMMQTDVGAEKMTEALGNGDG--------NEEGGTDDGTGVKAEPAVPEEELDPVTLDA 975
                  |:.|:||    .|:|....|.        .||..|:    :|.|....|||.|.     
  Fly   112 ------EIPQSDV----ETDADAEADALFVELVKDQEESDTE----IKREFVDEEEEEDD----- 157

  Fly   976 ATAVTTTAIAAAISAAAAATATSLESPVATTASSSTTLFPTPTPFDFDYDIMRDEAQQSSPNIHD 1040
                                                           |.|   ||......::.|
  Fly   158 -----------------------------------------------DDD---DEFICEDVDVGD 172

  Fly  1041 VSKALSDNASSSCPINESYKLLSTTALETSPAKGLRSNSRLHRSSIHICKLCNQTFDELGKLVKH 1105
             |:||...:|..               |..|.|     .|:.:.    |..|.:.::...:|.||
  Fly   173 -SEALYGKSSDG---------------EDRPTK-----KRVKQE----CTTCGKVYNSWYQLQKH 212

  Fly  1106 EMELHSNTERSRWGYQHKCAICNTSYRTLTLLKFHMKRHSNR-KSQCKLCPKSFVTIAELERHTK 1169
            ..|.||...      .|.|.||....|....|:.||..|..: :.||:.|||||.......||.:
  Fly   213 ISEEHSKQP------NHICPICGVIRRDEEYLELHMNLHEGKTEKQCRYCPKSFSRPVNTLRHMR 271

  Fly  1170 AKHSKDKTLRCFMDGCRKTFA----FKHHLIRHQKASHLSTRYICPVCNKEEKSNVHLKNHMSVH 1230
             .|...|..:|  :.|...|:    ..:|.:||:...:   ..||.:||...||.....:|..:|
  Fly   272 -MHWDKKKYQC--EKCGLRFSQDNLLYNHRLRHEAEEN---PIICSICNVSFKSRKTFNHHTLIH 330

  Fly  1231 K-GEITYKCPKCDRSYLRRGRLVTH 1254
            | ....:.|..|.:|:..|..|..|
  Fly   331 KENRPRHYCSVCPKSFTERYTLKMH 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30020NP_610627.2 zf-AD 25..106 CDD:285071
C2H2 Zn finger 369..389 CDD:275368
C2H2 Zn finger 397..418 CDD:275368
C2H2 Zn finger 442..460 CDD:275368
C2H2 Zn finger 730..750 CDD:275368
C2H2 Zn finger 758..777 CDD:275368
C2H2 Zn finger 1089..1110 CDD:275368 6/20 (30%)
C2H2 Zn finger 1124..1144 CDD:275368 7/19 (37%)
C2H2 Zn finger 1151..1172 CDD:275368 8/20 (40%)
C2H2 Zn finger 1180..1203 CDD:275368 6/26 (23%)
C2H2 Zn finger 1210..1230 CDD:275368 6/19 (32%)
C2H2 Zn finger 1238..1254 CDD:275368 5/15 (33%)
Sry-deltaNP_524581.1 COG5048 <205..360 CDD:227381 47/163 (29%)
C2H2 Zn finger 225..245 CDD:275368 7/19 (37%)
C2H2 Zn finger 253..273 CDD:275368 8/20 (40%)
C2H2 Zn finger 281..301 CDD:275368 4/21 (19%)
C2H2 Zn finger 310..327 CDD:275370 5/16 (31%)
zf-C2H2 337..359 CDD:278523 6/19 (32%)
C2H2 Zn finger 339..359 CDD:275368 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45440001
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.930

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