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Protein Alignment CG30020 and prdm9

DIOPT Version :9

Sequence 1:	NP_610627.2	Gene:	CG30020 / 36156	FlyBaseID:	FBgn0050020	Length:	1309	Species:	Drosophila melanogaster
Sequence 2:	NP_957196.1	Gene:	prdm9 / 393876	ZFINID:	ZDB-GENE-040426-1319	Length:	853	Species:	Danio rerio

Alignment Length:	1152	Identity:	192/1152 - (16%)
Similarity:	312/1152 - (27%)	Gaps:	501/1152 - (43%)

- Green bases have known domain annotations that are detailed below.

  Fly   128 CAEPVQPLKTMR-----HECQVCGVVLYNRLELKQHIRQHA--EGLSYNCKLCSFTSLKQRTLFE 185
            |..|:.|.:..|     ...|..|.: ::::...:.|.|.:  |..:.||. |.|......||
Zfish   182 CCRPISPGQEFRVWYAEEYAQGLGAI-WDKIWDNKCISQGSTEEQATQNCP-CPFCHYSFPTL-- 242

  Fly   186 HYVTMHNMPLSQAEEYVKSKHLPAPKEEEVKAVCTLEDMELLIPTVLRPEDY---VQPHPHIDND 247
              |.:|        .:||..|                           |.:|   .|.|| ::::
Zfish   243 --VYLH--------AHVKRTH---------------------------PNEYAQFTQTHP-LESE 269

  Fly   248 QLRDID--HQLAVSMDEPVPSVDSLTSTLPPMDTPNVSIGTEYLVLPDGSLQQVNGSGVVIEYID 310
            ....|.  .|..|:.||.:.     |.|.|..::|...|.|:              :|..|...:
Zfish   270 AHTPITEVEQCLVASDEALS-----TQTQPVTESPQEQISTQ--------------NGQPIHQTE 315

  Fly   311 DSKPNSSSNVNVSLQNLLSSHNDPMDIDVNELIVEEMMPQIRIKPKPAVIGTSIHKHKCKFCPKT 375
            :|....:|::..:                    ..|:..:|               |.|..|.::
Zfish   316 NSDEPDASDIYTA--------------------AGEISDEI---------------HACVDCGRS 345

  Fly   376 FSTVARLKSHQLT-HSNLPKFFCDQCDFYSLRSADLIQHYKMVHHRVDENGKTGKEQAQGIE--- 436
            |.....||.||.| ||....:.|.||.....::..|.:|    .|       |.:||.:.||
Zfish   346 FLRSCHLKRHQRTIHSKEKPYCCSQCKKCFSQATGLKRH----QH-------THQEQEKNIESPD 399

  Fly   437 --SRVYSCDMCLFETSTVSQLRTHYKERHTVQPTEVQLRPSWTGEPTTTRGVAAKQQTPAKILNH 499
              |.:|.|..|.........|..|.|..|..:...:....|.|.|...               :|
Zfish   400 RPSDIYPCTKCTLSFVAKINLHQHLKRHHHGEYLRLVESGSLTAETEE---------------DH 449

  Fly   500 TDIPLGIKYPPGVLETQAPLPQPVVHQPMPDPMQQTEPMATTSTTITESGDINVVVDATPLFYAA 564
            |::         ..:.|.|..:|        |.:..:                           :
Zfish   450 TEV---------CFDKQDPNYEP--------PSRGRK---------------------------S 470

  Fly   565 TSNSLLVTNPAPVTTVEETTGTASNHAFGIFPEISEGNLPVNEAVQQAPANSSSVSVFGDMQDFI 629
            |.|||            :..|.....|.|    ...|..|.|:.::                  :
Zfish   471 TKNSL------------KGRGCPKKVAVG----RPRGRPPKNKNLE------------------V 501

  Fly   630 DNTDVAAICTIPADGMPVVDGDDIVIDNNNISLDFDAENLFEDFEEEEDDTVADEEDEADNEDEN 694
            :...::.|||                         :.|..|.|.|..:.......:||.||.:.
Zfish   502 EVQKISPICT-------------------------NCEQSFSDLETLKTHQCPRRDDEGDNVEH- 540

  Fly   695 DNNDAATDQNLLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCE 759
                                   ..|.|:::    |..|.:.|::....:.|..:.:|...|.|.
Zfish   541 -----------------------PQEASQYI----CGECIRAFSNLDLLKAHECIQQGEGSYCCP 578

  Fly   760 LCTNLYNMKRLLIKHYKTVHKRMPTRDMVQAKGDKVSVARTNIEKLYPGRIKNPMLMCAKCPFEC 824
            .|...:|....|.:|.:|:|.:                     ||.|         .|..|....
Zfish   579 HCDLYFNRMCNLRRHERTIHSK---------------------EKPY---------CCTVCLKSF 613

  Fly   825 ESDSEMRKHLNAHHGINDGVSEHANEVFIIRKLPFECPRCIRSFAAKTTLSRHLQRSHLVDTIIE 889
            ...|.:::|..:|.    ....|.....:.....|.|..|..||..:..|.:|::|.|     .|
Zfish   614 TQSSGLKRHQQSHL----RRKSHRQSSALFTAAIFPCAYCPFSFTDERYLYKHIRRHH-----PE 669

  Fly   890 MQTPHCGEAITTTMATSSSTISEPVNSVTVDGQHNEMMQTDVGAEKMTEALGNGDGNEEGGTDDG 954
            |...:.                                                 ..:|||
Zfish   670 MSLKYL-------------------------------------------------SFQEGG---- 681

  Fly   955 TGVKAEPAVPEEELDPVTLDAATAVTTTAIAAAISAAAAATATSLESPVATTASSSTTLFPTPTP 1019
                                                     ..|:|.|
Zfish   682 -----------------------------------------VLSVEKP----------------- 688

  Fly  1020 FDFDYDIMRDEAQQSSPNIHDVSKALSDNASSSCPINESYKLLSTTALETSPAKGLRSNSRLHR- 1083
                                           .||  ::..|..||       .||.:::|...:
Zfish   689 -------------------------------HSC--SQCCKSFST-------IKGFKNHSCFKQG 713

  Fly  1084 SSIHICKLCNQTFDELGKLVKHEMELHSNTERSRWGYQHKCAICNTSYRTLTLLKFHMKRHSNRK 1148
            ..:::|..|.:.|.....|.:|: .:|:..:      .:.|:.|..|:.....|..|::.|:..|
Zfish   714 EKVYLCPDCGKAFSWFNSLKQHQ-RIHTGEK------PYTCSQCGKSFVHSGQLNVHLRTHTGEK 771

  Fly  1149 S-QCKLCPKSFVTIAELERHTKAKHSKDKTLRCFMDGCRKTFAFKHHLIRHQKASHLSTRYICPV 1212
            . .|..|.:||....:|.|| :.|||..:.       |:                       ||.
Zfish   772 PFLCSQCGESFRQSGDLRRH-EQKHSGVRP-------CQ-----------------------CPD 805

  Fly  1213 CNKEEKSNVHLKNHMSVHKGEITYKCPKCDRSYLRRGRLVTHALIIH 1259
            |.|.......||.|..:|.|...:.|.:|.:|:.||..|..|...:|
Zfish   806 CGKSFSRPQSLKAHQQLHVGTKLFPCTQCGKSFTRRYHLTRHHQKMH 852

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.