DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30020 and znf-236

DIOPT Version :10

Sequence 1:NP_610627.2 Gene:CG30020 / 36156 FlyBaseID:FBgn0050020 Length:1309 Species:Drosophila melanogaster
Sequence 2:NP_001293225.1 Gene:znf-236 / 3565634 WormBaseID:WBGene00021689 Length:1245 Species:Caenorhabditis elegans


Alignment Length:1185 Identity:208/1185 - (17%)
Similarity:359/1185 - (30%) Gaps:424/1185 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   234 PEDYVQPHPHI-DNDQLRDID--HQL-----AVSMD-EPVPSVDSLTSTLPPMDTPNVSIGTEYL 289
            |.||:..:.:. :|:.:|::.  |::     |.::| |||.|:|.|.           .:|.|..
 Worm    31 PADYMFDYSNYNNNNNVRELGSRHEIAQYPPAQNLDFEPVQSLDGLD-----------FVGEEVA 84

  Fly   290 VLPDGSLQQVNGSGVVIEYIDDSKPNSSSNVNVSLQNLLSSHNDPMDI---DVNELIVEEMMPQI 351
            :  .|.:::|..        |:|:..|...:            |..||   :....|.:......
 Worm    85 I--RGEIEEVED--------DESEDESDEEI------------DRPDIYCMECRSKIEDTNSHDC 127

  Fly   352 RIKPKPAVIGTSIHKHKCKFCPKTFSTVARLKSHQ-LTHSNLPKF-------FC--DQCDFYSLR 406
            |:|||         ..:|..|.::|:....||.|: |.|.....|       ||  |:......|
 Worm   128 RLKPK---------LFECTECRESFNFEKNLKIHKILDHLKATDFVRGTICQFCSKDKTHAPFSR 183

  Fly   407 SADLIQHYKMVHHRVDENGKTGKEQAQGIESRVYSCDMCLFETSTVSQLRTHYKERHTVQPTEVQ 471
            .:..|.|.| ||.:.|:                ..|:.|..|......|..|.:..|:....|:.
 Worm   184 FSAYIGHVK-VHLKSDD----------------LECEQCGNEFENELDLDHHIRREHSTDVYELV 231

  Fly   472 LRPS----WTGEPTTTRGVAAKQQTPAKILNHTDIPLGIKYPPGVLETQAPLPQ-------PVVH 525
            ..|.    .|.|.::...:....|...||......|...|.||.........|.       |..:
 Worm   232 FCPKCKKVLTLEESSAHSLLHSAQNSVKIRRRKSAPFPEKPPPKKASHTGKKPVREKKNVCPYCN 296

  Fly   526 QPMPDPMQ---------QTEPMATTSTTI-----------------------TESGDI-NVVVDA 557
            :....|.:         :.:.:.::||.|                       |..|:. .:|...
 Worm   297 KAFVRPAELARHSFVHLRAKHLQSSSTEIPKWKCAICFKEYAHQAGLSEHKRTVHGNAKQIVCRI 361

  Fly   558 TPLFYAATSNSLLVTNPAPVTTVEETTGTASNHAFGIFPEISEGNLPVNEAVQQAPANSSSVSVF 622
            ..:.::..||.                   ..|...|.|...:..   ::...|.|   ...:||
 Worm   362 CGMSFSKRSNH-------------------DRHMLKIHPIEQDSR---DQCQFQCP---DCPTVF 401

  Fly   623 GDMQDFIDNTDVAAICT----IPADGMPVV----------DGDDIVIDNNNISLDFDAENLFED- 672
            ..:.....:.....:.|    ||...:|:.          :..|..:...:......||:.:.| 
 Worm   402 KKLGSLTAHKRACHLRTDTLKIPTKPLPIYKRHVCKTCKREFRDAKMLEKHRRFHLLAEHRWRDA 466

  Fly   673 ---------------------------------FEEEEDDTVADEEDEADNEDENDNNDAATDQN 704
                                             |||||                           
 Worm   467 LLLHGGGGGERKCTYCDKSFVLRASLVWHMQKHFEEEE--------------------------- 504

  Fly   705 LLLTSDDDDVDDFDDEQSKHLQKPYCIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKR 769
                           :|.:|..:|:|..|:..|.||.::..|:.....:.   |.:|...::.::
 Worm   505 ---------------QQQEHHHQPFCALCDLNFFSQQEYRQHLDEQHSVI---CAVCNQKFSSRQ 551

  Fly   770 LLIKH-----YKTVHKRMPTRDMVQAKGDKVSVAR--------TNIEKLYPGRIKNPMLMCAKCP 821
            :...|     :.|.|..|.   |.|.:.::|.:.|        |...::...|.::.......| 
 Worm   552 VYEDHICNRKFATRHHAMM---MAQQQTNRVLICRQCKPPQRLTTARQIKEHRARHLPRKSHLC- 612

  Fly   822 FECESDSEMRKHLNAHHGINDGVSEHANEVFIIRKLPFECPRCIRSFAAKTTLSRHLQRSHLVDT 886
            :.|.......:.|:.|..::|             :.|.:|..|.:.|.::..|.:|.:.||..||
 Worm   613 WTCHKSFRTAQLLSLHAEVHD-------------RQPIQCAHCPQVFHSRVALKQHTRISHGGDT 664

  Fly   887 IIEMQTPHCGEAITTTMATSSSTISEPVNSVTVDGQHNEMMQTDVGAEKMTEALGNGDGNEEGGT 951
            ..:     |...:..|||.|:.:.:|  ..:..|....:..:....|..:||.:.:|...||..:
 Worm   665 NYQ-----CVVHVDRTMAMSAQSFAE--YGLAADQNEGDDDEHAHRAHSVTEWMDSGVVEEEVIS 722

  Fly   952 DDGTG---VKAEPAVPEEELDPV------------------------TLDAATAVTTTAIAAAIS 989
            .:..|   ...:|.:.:.| .|:                        ..|.:..:.|..|..:..
 Worm   723 QEDQGDIRYTIQPILSDAE-QPIRCEVCHHLYNNIEMLCDHWQGSDTDTDHSYGIVTCPICESRI 786

  Fly   990 AAAAATATSLESPVATTASSSTTLFPTPTPFDFDYDIMRDEAQQSSPNIHD---VSKALSDNAS- 1050
            ..|:..|..|.         |..||..|          |...|...|:.:|   ::.|.||:.: 
 Worm   787 RGASEAANHLR---------SVHLFARP----------RIHLQFMKPSTNDLIPITSAPSDSLAL 832

  Fly  1051 ----SSCPINESYKLLSTTALETSPAKGLRSNSRLHRSSIHICKLCNQTFDELGKLVKHEMELHS 1111
                |:.|:         |.::....||            |.|..|.:.......|.:| |.:|:
 Worm   833 AIIPSTTPV---------TTIQQQVKKG------------HECPQCLKVLTRKNDLDRH-MRIHA 875

  Fly  1112 NTERSRWGYQHKCAICNTSYRTLTLLKFHMKRHSNR--KSQCKLCPKSFVTIAELERHTKAKHSK 1174
            ...      ..||..|:.|:|..:.|..||:.||:.  :.||.:|.|||.               
 Worm   876 GAR------DFKCPTCSMSFRVKSTLTTHMQTHSDAPPQYQCTVCDKSFY--------------- 919

  Fly  1175 DKTLRCFMDGCRKTFAFKHHLIRHQKASHLSTRYICPVCNKEEKSNVHLKNHMSVHKGEITYKCP 1239
                                                     |:|:   |..||.:|.||:.:||.
 Worm   920 -----------------------------------------EKKT---LVVHMRIHTGEMPFKCR 940

  Fly  1240 KCDRSYLRRGRLVTH 1254
            .||..:.......||
 Worm   941 FCDLHFRTIAMTRTH 955

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30020NP_610627.2 zf-AD 25..103 CDD:214871
C2H2 Zn finger 369..389 CDD:275368 7/20 (35%)
C2H2 Zn finger 397..418 CDD:275368 6/22 (27%)
C2H2 Zn finger 442..460 CDD:275368 5/17 (29%)
C2H2 Zn finger 730..750 CDD:275368 6/19 (32%)
C2H2 Zn finger 758..777 CDD:275368 3/23 (13%)
C2H2 Zn finger 1089..1110 CDD:275368 5/20 (25%)
C2H2 Zn finger 1124..1144 CDD:275368 7/19 (37%)
C2H2 Zn finger 1151..1172 CDD:275368 5/20 (25%)
C2H2 Zn finger 1180..1203 CDD:275368 0/22 (0%)
C2H2 Zn finger 1210..1230 CDD:275368 5/19 (26%)
C2H2 Zn finger 1238..1254 CDD:275368 3/15 (20%)
znf-236NP_001293225.1 C2H2 Zn finger 136..157 CDD:275368 7/20 (35%)
C2H2 Zn finger 169..194 CDD:275368 7/25 (28%)
C2H2 Zn finger 202..222 CDD:275368 5/19 (26%)
C2H2 Zn finger 233..263 CDD:275368 6/29 (21%)
C2H2 Zn finger 292..312 CDD:275368 2/19 (11%)
C2H2 Zn finger 330..351 CDD:275368 1/20 (5%)
C2H2 Zn finger 359..380 CDD:275368 3/39 (8%)
C2H2 Zn finger 394..412 CDD:275368 3/20 (15%)
C2H2 Zn finger 436..456 CDD:275368 1/19 (5%)
C2H2 Zn finger 479..496 CDD:275368 0/16 (0%)
C2H2 Zn finger 515..536 CDD:275371 6/20 (30%)
C2H2 Zn finger 540..561 CDD:275371 3/20 (15%)
C2H2 Zn finger 582..604 CDD:275368 3/21 (14%)
C2H2 Zn finger 612..632 CDD:275368 4/20 (20%)
C2H2 Zn finger 639..658 CDD:275368 5/18 (28%)
C2H2 Zn finger 854..874 CDD:275368 5/20 (25%)
C2H2 Zn finger 882..902 CDD:275368 7/19 (37%)
C2H2 Zn finger 911..931 CDD:275368 10/78 (13%)
zf-H2C2_2 924..948 CDD:463886 10/23 (43%)
Blue background indicates that the domain is not in the aligned region.

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