DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG30020 and kmg

DIOPT Version :9

Sequence 1:NP_610627.2 Gene:CG30020 / 36156 FlyBaseID:FBgn0050020 Length:1309 Species:Drosophila melanogaster
Sequence 2:NP_609604.1 Gene:kmg / 34706 FlyBaseID:FBgn0032473 Length:747 Species:Drosophila melanogaster


Alignment Length:1050 Identity:188/1050 - (17%)
Similarity:305/1050 - (29%) Gaps:435/1050 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    66 VSADNAPELPQHICLECSKSLQVAYYFLQNALRAHEILCRKLCPKVSKRLNGTLAQEQEKPACAE 130
            ||||:||  |..:..|          .::|:|           |..:...|.   .:.|.|.|  
  Fly    75 VSADSAP--PGDLAKE----------NMENSL-----------PDGNPCNNN---NDDELPQC-- 111

  Fly   131 PVQPLKTMR-HECQVCGVVLYNRLELKQHIRQ-HAEGLSYN-CKLCSFTSLKQRTLFEHYVTMHN 192
                 |..| :.|..|.....|......|:|. |.|.:..| ||||.:.|...:.|..|...:|.
  Fly   112 -----KIRRNYSCNQCAFFTQNPRSHLSHLRDVHGERIVINECKLCLYASRHFQKLVRHMKMVHG 171

  Fly   193 MP------------------LS------QAEEYVKSKHLP--------------APKEEEVKAVC 219
            ..                  ||      :.||.::.:...              .|..|::|...
  Fly   172 CSDDGGAVQGSGAQPRGKRNLSREVRKRRLEESIEGQGATGQCLDLSVLRMIQNGPPLEQLKVEL 236

  Fly   220 TLEDMELL--IPTVLRPEDYVQPHPHIDNDQLRDIDHQLAVSMDEPVPSVDSLTSTLPPMDTPNV 282
            ..::|:||  :....|.::.:|....:::       |....||     :.:..|..:||....::
  Fly   237 QQQEMQLLASVQAYNRQQEMLQLQQIVES-------HDNIFSM-----AYEFQTKLMPPKQAESL 289

  Fly   283 SIGTEYLVLPDGSLQQVNGSGVVIEYIDDSKPNSSSNVNVSLQNLLSSHNDPMDIDVNELIVEEM 347
                        .|:|.|.|       .||:..:.|               |.. |..||:    
  Fly   290 ------------KLEQQNSS-------SDSEETAKS---------------PSP-DTRELV---- 315

  Fly   348 MPQIRIKPKPAVIGTSIHKHKCKFCPKTFSTVARLKSHQLTHSNLPKFFCDQCDFYSLRSADLIQ 412
                          :...:.:|:.|..:....||.|.|...|| :|...|..|||::....:|.:
  Fly   316 --------------SGKEQFQCQKCSYSTPIRARFKKHVKYHS-MPLIKCSSCDFHTPYKWNLDR 365

  Fly   413 HYKMVHHRVDENGKTGKEQAQGIESRVYSCDMCLFETSTVSQLRTHYKERHTVQPTEVQLRPSWT 477
            |.|       .:|..|.          :.|..|.|.|.....|..|....|              
  Fly   366 HTK-------NHGANGH----------FKCSCCDFSTDIKQSLTIHESNHH-------------- 399

  Fly   478 GEPTTTRGVAAKQQTPAKILNHTDIPLGIKYPPGVLETQAPLPQPVVHQ-------PMPDPMQQT 535
                                                   .|:|   |||       ...|.:.|.
  Fly   400 ---------------------------------------VPMP---VHQMGNRSRDEAEDLVDQQ 422

  Fly   536 EPMATTSTTITESGDINVVVDATPLFYAATSNSLLVTNPAPVTTVEETTGTASNHAFGIFPEISE 600
            ...:....|....|       ||    .|::.|||          ..|:|...:|.         
  Fly   423 SSGSRKPETFKNGG-------AT----VASTESLL----------PRTSGIVCSHC--------- 457

  Fly   601 GNLPVNEAVQQAPANSSSVSVFGDMQDFIDNTDVAAICTIPADGMPVVDGDDIVIDNNNISLDFD 665
                     |:...|  ::.:...:|          :||:.......:..        :|:.:.|
  Fly   458 ---------QKRVGN--AMQLINHLQ----------VCTLALHNTTQLQA--------SINAEVD 493

  Fly   666 AENLFEDFEEEEDDTVADEEDEADNEDENDNNDAATDQNLLLTSDDDDVDDFDDEQSKHLQKPY- 729
            ..:  |||.....|......:.|....|      .|:   :|..:.:|:        ..|:|.: 
  Fly   494 LHD--EDFPNAPTDLSYCGVETAPGYGE------VTE---VLPEEPEDL--------APLKKVFK 539

  Fly   730 CIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIKHYKTVHKRMPTRDMVQAK--- 791
            |.:|:....:..:|..|:..|....|:.|.||....|.:..:.||.:.  |.:..|...||:   
  Fly   540 CPHCSFWAATASRFHVHIVGHLNRKPFECSLCAYRSNWRWDITKHIRL--KALRDRSHNQAQVLM 602

  Fly   792 GDKVSVARTNIEKLYPGRIKNPMLMCAKCPFECESDSEMRKHLNAHHGINDGVSEHANEVFIIRK 856
            .|:  ..|.|..|.      |..|...|...|..:||:         |:..|      |:.:   
  Fly   603 NDE--TGRRNYAKY------NQYLTMMKVSAEQLADSK---------GMRTG------EMIV--- 641

  Fly   857 LPFECPRCIRSFAAKTTLSRHLQRSHLVDT--IIEMQTPHCGEAITTTMATSSSTISEPVNSVTV 919
            :|.|                .|...|.::|  ||||        :.:..:||:..:.:|.:..|.
  Fly   642 MPPE----------------KLDDHHPMETEEIIEM--------VDSAHSTSALDLRKPRDDQTE 682

  Fly   920 DGQHNEMMQTDVGAEKMTEALGNGDGNEEGGTDDGTGVKAEPAVPEEELDPVTLDAATAVTTTAI 984
            |                  ..||.|                 .:|:|                  
  Fly   683 D------------------LAGNSD-----------------ELPQE------------------ 694

  Fly   985 AAAISAAAAATATSLESPVATTASSSTTLFPTPTPFDFDYDIMRDEAQQSSP-NIHDVSKALSDN 1048
                   .|.|..:|| |::..:.:|:.:.|.|               :.|| |:.......||.
  Fly   695 -------GAKTEPNLE-PLSFKSLNSSQVMPKP---------------KGSPMNLTKTDGGQSDE 736

  Fly  1049 ASSSCPINES 1058
            .:|:...|||
  Fly   737 TTSADESNES 746

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30020NP_610627.2 zf-AD 25..106 CDD:285071 10/39 (26%)
C2H2 Zn finger 369..389 CDD:275368 6/19 (32%)
C2H2 Zn finger 397..418 CDD:275368 7/20 (35%)
C2H2 Zn finger 442..460 CDD:275368 6/17 (35%)
C2H2 Zn finger 730..750 CDD:275368 4/19 (21%)
C2H2 Zn finger 758..777 CDD:275368 6/18 (33%)
C2H2 Zn finger 1089..1110 CDD:275368
C2H2 Zn finger 1124..1144 CDD:275368
C2H2 Zn finger 1151..1172 CDD:275368
C2H2 Zn finger 1180..1203 CDD:275368
C2H2 Zn finger 1210..1230 CDD:275368
C2H2 Zn finger 1238..1254 CDD:275368
kmgNP_609604.1 C2H2 Zn finger 540..560 CDD:275370 4/19 (21%)
C2H2 Zn finger 568..586 CDD:275370 6/17 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR24403
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.