DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30020 and mld

DIOPT Version :10

Sequence 1:NP_610627.2 Gene:CG30020 / 36156 FlyBaseID:FBgn0050020 Length:1309 Species:Drosophila melanogaster
Sequence 2:NP_001247289.1 Gene:mld / 2768685 FlyBaseID:FBgn0263490 Length:1965 Species:Drosophila melanogaster


Alignment Length:1297 Identity:242/1297 - (18%)
Similarity:413/1297 - (31%) Gaps:380/1297 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   208 PAPKE--EEVKAVCT--LEDMELLIPTVL-RPEDYVQPHPHIDNDQLRDID--HQLAVSMDEPVP 265
            |.|.:  .|....|.  :|.:::..|... .|.|.|         .|.|::  .:|.|.|::...
  Fly   793 PTPMDFMAEFAKHCANGIEQLKVTTPVPSPTPSDLV---------PLNDLEAKQKLEVEMNDVET 848

  Fly   266 SVDSLTSTLPP--MDTPNVSIGTEYLVLPDGSLQQVNGSGVVIEYIDDSKPN--SSSNVNVSLQN 326
            :::.:.:.:..  |.|||.:...|:|...|.:......|.|      .|.||  ..|:|......
  Fly   849 TLNGILNEMQDQHMYTPNCAHIDEFLTPADYATLTEQESSV------SSPPNPFEQSSVAEPKDE 907

  Fly   327 LLSSHNDPMDID--VNELI-----------VE----------EMMPQIR-IKPK----PAVIGTS 363
            ..|:..||.|..  .||||           :|          |:...:| ::|.    ||  |..
  Fly   908 KPSATEDPFDNSNFTNELIGFQNDIPCFENIETPEEGQNLHLELTQFLRDLQPSQSDPPA--GEQ 970

  Fly   364 IHKHKCKFCPKTFSTVARLKSHQLTHSNLPKFFCDQCDFYSLRSADLIQHYKMVHHRVDENGKTG 428
            :.|.:.:..|.|.....:        ||||           :::||.....:..:|...|:..:.
  Fly   971 VEKIEMETQPSTVQMDVQ--------SNLP-----------VQAADTQPQNESANHSPFESPISS 1016

  Fly   429 KEQAQGIESRVYSCDMCLFETSTVSQLRTHYKERHTVQPTEVQLRPSWTGEPTTTRGVAAKQQTP 493
            .:....||.::..    ..||....|:.|  :.:|.|                  ..|.:.|...
  Fly  1017 PQVQSQIELQMEP----QIETQMQPQIET--RMQHDV------------------LSVQSPQNHQ 1057

  Fly   494 AKILNHTDIPLGIKYPPGV---LETQAP-------LPQPVVHQPMPD--------PMQQTEPMAT 540
            .::.:|....:..:.||.:   :|.|..       :|| ..||.:|.        |..||:...|
  Fly  1058 PQVQSHDQSQMQHQIPPQIEPQIEVQNQEQNTLQLVPQ-AQHQVVPHVQLQSQLVPHVQTQGTTT 1121

  Fly   541 TST------------TITESGDINVVV-------DATPLFYAATS-----------NSLLVTNPA 575
            |.|            |:.:|.:...|:       :.|..:....|           ..|.....|
  Fly  1122 TVTYEQIYQQHIVQQTVQQSSNKMQVISLPSAGSETTRQWQTQQSQQQQQVQWSSVGGLEAIKSA 1186

  Fly   576 PVTTVEETTGTASNHAFGIFPEISEGNLPVNEAVQQAPANSSSVSVFGDMQDFIDNTDVAAICTI 640
            ||.:|..||.|....|..::|:.:|    ....:|.|...|..:......|....          
  Fly  1187 PVESVAPTTTTYYISASDLYPQQTE----TYTMLQPASNESYVIEQVNHQQQHCQ---------- 1237

  Fly   641 PADGMPVVDGDDIVIDNNNISLDFDAENLFEDFEEEEDDTVADEEDEADNEDENDNNDAATDQNL 705
                      ..|.:...........:   :..::::...:..::.|......:.:|......::
  Fly  1238 ----------QQIQMSQQQHQRQHQQQ---QAQQQQQPIMILIQQPEIQQPVASASNPQQAPLHI 1289

  Fly   706 LLTSDDDDV------------DDFDDEQSKHLQKPY----------------------------- 729
            ...:..:||            ..:..:|.:.||:|.                             
  Fly  1290 YNAATSNDVHQMQHTQRQQIRQQYQHQQYQRLQQPQQTRVVQSHPVLGMPGATSISTKVTPIPVT 1354

  Fly   730 ----------CIYCNK--KFTSQYKFENHMF-VHRGLAP-------------------------- 755
                      |.:|:.  :|:|..::..|:. :|..:||                          
  Fly  1355 AARGRPLTLKCRFCHNGPRFSSSLEYSRHIIDLHPAVAPFNCPHCPMAFAGRTKRSQHILSHHVV 1419

  Fly   756 --YRCELCTNLYNMKRLLIKHYKTVHKRMPTRDMVQAKGDKVSVARTNIEKLYPGRIKNPMLMCA 818
              |:|..|::::..::.|..|.:..|..:.|......|.:.|.:..|: |:...||...|.|...
  Fly  1420 QQYQCGQCSHVFPAQKALDVHIQRFHMTLKTDPSGAVKVEDVQLQITS-ERRPRGRPYKPRLQLQ 1483

  Fly   819 KCPFECESDSEMRKHLNAHHGINDGVSEHANEVFIIRKLPFECPRCIRSFAAKTTLSRHLQRSHL 883
            :...:.:...::::|......:........::.....:|..|..:.::....:....:|.|...:
  Fly  1484 QHQLQPQQKLQVQQHQQQQKALQQLPQAQHHQQQQQPQLQQEVLQQVQQLQVQVQPQQHQQHQQV 1548

  Fly   884 VDT-------IIEMQTPHCGEAITTTMATSSSTISEPVNSVTVDGQHNEMMQTDVGAEKMTEALG 941
            :..       :::.|:||   ..|..|..|.:|   |...:...           ..|..|.  |
  Fly  1549 LQVQQPQQQPLMQPQSPH---PSTVEMQASPTT---PRKILCCP-----------DCEDCTS--G 1594

  Fly   942 NGDGNEEGGTDDGTGVKAEPAVPEEELDPVTLDAATAVTTTAIAAAISAAAAATATSLESPVATT 1006
            :...||:                .|||.  ||.|...|.|                    |.:|.
  Fly  1595 HSHANEQ----------------FEELQ--TLQAPPTVLT--------------------PPSTI 1621

  Fly  1007 ASSSTTLFPTPTPFDFDYDIMRDEAQQSSPN--------------------IHDVSKALSDNASS 1051
            .|     .|:|.|..:...|.....:||.|:                    :|..:...|.:.||
  Fly  1622 VS-----VPSPQPMVYSQHITMPSPEQSEPDSTTTLRQYRKRGVIVGPQGPLHLATPVASPSPSS 1681

  Fly  1052 SCPINESYKLL--STTALETSPA----KGLRSN---SRLHRSSIHICKLCNQTFDELGKLVKHEM 1107
            | |.:.:...:  ::.|...|||    ..:.|.   |.|..|  |.|..|.:.|.....|.||..
  Fly  1682 S-PSSSTVDHIPPASPATPASPAPPPSPAVASTVQVSELRTS--HHCLYCEERFTNEISLKKHHQ 1743

  Fly  1108 ELHSNTERSRWGYQHKCAICNTSYRTLTLLKFHMKRH--SNRKSQCKLCPKSFVTIAELERHTKA 1170
            ..|.    :.....:.|.||...||..|.|..||:.|  ..|..:|.:|...|...::|..|...
  Fly  1744 LAHG----ALTTMPYVCTICKRGYRMRTALHRHMESHDVEGRPYECNICRVRFPRPSQLTLHKIT 1804

  Fly  1171 KHSKDKTLRCFMDGCRKTFAFKHHLIRHQKASHLSTRYICPVCNKEEKSNVHLKNHMSVHKGEIT 1235
            .|...|...|  |.|.|.|..:..|..|.| .|....|.|..|::..:....|:.|...| .|:.
  Fly  1805 VHLLSKPHTC--DECGKQFGTESALKTHIK-FHGELGYQCDGCDRTFEYLKELRKHRRTH-SEMF 1865

  Fly  1236 YKCPKCDRSYLR----RGRLVTH-ALIIHDLRFTTEELGNLSSLATNQARPNDL--KVATPV 1290
            |||..|..|::|    |..:.|| .|.:    |..|:..:.|....|....:|.  ..|||:
  Fly  1866 YKCKFCPSSFMRFTNFRAHMKTHLPLGV----FRNEDAASKSPSNNNSHASSDKLENPATPI 1923

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30020NP_610627.2 zf-AD 25..103 CDD:214871
C2H2 Zn finger 369..389 CDD:275368 2/19 (11%)
C2H2 Zn finger 397..418 CDD:275368 2/20 (10%)
C2H2 Zn finger 442..460 CDD:275368 4/17 (24%)
C2H2 Zn finger 730..750 CDD:275368 5/22 (23%)
C2H2 Zn finger 758..777 CDD:275368 4/18 (22%)
C2H2 Zn finger 1089..1110 CDD:275368 6/20 (30%)
C2H2 Zn finger 1124..1144 CDD:275368 9/19 (47%)
C2H2 Zn finger 1151..1172 CDD:275368 5/20 (25%)
C2H2 Zn finger 1180..1203 CDD:275368 8/22 (36%)
C2H2 Zn finger 1210..1230 CDD:275368 4/19 (21%)
C2H2 Zn finger 1238..1254 CDD:275368 5/19 (26%)
mldNP_001247289.1 zf-AD 186..255 CDD:214871
PAT1 <959..>1109 CDD:401645 35/195 (18%)
C2H2 Zn finger 1365..1388 CDD:275368 5/22 (23%)
C2H2 Zn finger 1396..1416 CDD:275368 0/19 (0%)
C2H2 Zn finger 1424..1445 CDD:275368 4/20 (20%)
C2H2 Zn finger 1725..1746 CDD:275368 6/20 (30%)
C2H2 Zn finger 1756..1776 CDD:275368 9/19 (47%)
C2H2 Zn finger 1785..1806 CDD:275368 5/20 (25%)
zf-C2H2 1812..1834 CDD:395048 8/24 (33%)
C2H2 Zn finger 1814..1834 CDD:275368 8/22 (36%)
zf-C2H2 1839..1861 CDD:395048 5/21 (24%)
C2H2 Zn finger 1841..1861 CDD:275368 4/19 (21%)
zf-C2H2 1866..1888 CDD:395048 7/21 (33%)
C2H2 Zn finger 1868..1888 CDD:275368 5/19 (26%)
Blue background indicates that the domain is not in the aligned region.

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