DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30020 and Znf48

DIOPT Version :9

Sequence 1:NP_610627.2 Gene:CG30020 / 36156 FlyBaseID:FBgn0050020 Length:1309 Species:Drosophila melanogaster
Sequence 2:XP_008758156.1 Gene:Znf48 / 103690203 RGDID:9115869 Length:590 Species:Rattus norvegicus


Alignment Length:609 Identity:113/609 - (18%)
Similarity:175/609 - (28%) Gaps:230/609 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   730 CIYCNKKFTSQYKFENHMFVHRGLAPYRCELCTNLYNMKRLLIKHYKTVHKR-------MPTRDM 787
            |..|.|.|........|...|.|..||:|.:|...:......|||.:| |:.       :|.|..
  Rat   165 CGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKGFGDSSARIKHQRT-HRGDQLPRPVVPRRQP 228

  Fly   788 VQAKGDKVSVARTNIEKLYPGRIKNPMLMCAKC---------------------PFECE------ 825
            .||..          |..:..:.::...:|..|                     ||.|:      
  Rat   229 SQAAP----------EATHRPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLGPKPFGCDVCGKEF 283

  Fly   826 -SDSEMRKHLNAHHGINDGVSEHANEVFIIRKLPFECPRCIRSFAAKTTLSRHLQRSHLVDTIIE 889
             ..|::.|||..|.|                :.|:.||.|.:.||..:...:|| |:|      .
  Rat   284 ARGSDLVKHLRVHTG----------------EKPYLCPECGKGFADSSARVKHL-RTH------S 325

  Fly   890 MQTPHCGEAITTTMATSSSTISEPVNSVTVDGQHNEMMQTDVGAEKMTEALGNGDGNEEGGTDDG 954
            .|.||.......:.:.||:.:...:.       |.|.......|..:.                 
  Rat   326 GQRPHACPECNRSFSLSSTLLRHRLT-------HMEPQDFSFSAYPVA----------------- 366

  Fly   955 TGVKAEPAVPEEELDPVTLDAATAVTTTAIAAAISAAAAATATSLESPVATTASSSTTLFPTPTP 1019
                  |.:|.....|:                      .|:.|| :|.:.:.||          
  Rat   367 ------PLIPSPPPPPL----------------------GTSPSL-TPRSPSQSS---------- 392

  Fly  1020 FDFDYDIMRDEAQQSSPNIHDVSKALSDNASSSCPINESYKLLSTTALETSPAKGLRSNSRL--- 1081
             |..:.:...|.:...|...:....|:.:....||               ...||.|.:|.|   
  Rat   393 -DGPFGLPGLEPEPGGPQAGEPPPPLAGDKPHKCP---------------ECGKGFRRSSDLVKH 441

  Fly  1082 HRSSIH------ICKLCNQTFDELGKLVKHEMELHSNTERSRWGYQHKCAICNTSYRTLTLLKFH 1140
            ||  :|      :|..|.:.|.:....||| :..|.. ||:|            .....|||:.|
  Rat   442 HR--VHTGEKPYLCPECGKGFADSSARVKH-LRTHQG-ERTR------------PPPPPTLLRPH 490

  Fly  1141 MKRHSNRKSQCKLCPKSFVTIAELERHTKAKHSKDKTLRCFMDGCRKTFAFKHHLIRHQKASHLS 1205
                 |......:.|:|.|                                      ..:.|..|
  Rat   491 -----NPPGSVPIVPQSRV--------------------------------------QGQPSGPS 512

  Fly  1206 TRYICPVCNKEEKSNVHLKNHMSVHKGEITYKCPKCDRSYLRRGRLVTHALIIHDLRFTTEELGN 1270
            ..::|..|.||...:..|..|...|.||..|||.:|.:.:......:.|            :.|:
  Rat   513 QLHVCGFCGKEFPRSSDLVKHRRTHTGEKPYKCAECGKGFGDSSARIKH------------QRGH 565

  Fly  1271 LS--SLATNQARPNDLKVATPVGL 1292
            |:  ........|..|:..:|.|:
  Rat   566 LALRPFGVGDGLPMPLQEESPAGM 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG30020NP_610627.2 zf-AD 25..106 CDD:285071
C2H2 Zn finger 369..389 CDD:275368
C2H2 Zn finger 397..418 CDD:275368
C2H2 Zn finger 442..460 CDD:275368
C2H2 Zn finger 730..750 CDD:275368 5/19 (26%)
C2H2 Zn finger 758..777 CDD:275368 5/18 (28%)
C2H2 Zn finger 1089..1110 CDD:275368 6/20 (30%)
C2H2 Zn finger 1124..1144 CDD:275368 4/19 (21%)
C2H2 Zn finger 1151..1172 CDD:275368 3/20 (15%)
C2H2 Zn finger 1180..1203 CDD:275368 0/22 (0%)
C2H2 Zn finger 1210..1230 CDD:275368 6/19 (32%)
C2H2 Zn finger 1238..1254 CDD:275368 2/15 (13%)
Znf48XP_008758156.1 zf-C2H2 84..105 CDD:278523
COG5048 85..471 CDD:227381 79/421 (19%)
C2H2 Zn finger 85..105 CDD:275368
zf-H2C2_2 97..120 CDD:290200
C2H2 Zn finger 113..133 CDD:275368
C2H2 Zn finger 165..185 CDD:275368 5/19 (26%)
zf-C2H2 165..185 CDD:278523 5/19 (26%)
zf-H2C2_2 177..200 CDD:290200 7/22 (32%)
C2H2 Zn finger 193..213 CDD:275368 6/20 (30%)
C2H2 Zn finger 248..268 CDD:275368 2/19 (11%)
C2H2 Zn finger 276..296 CDD:275368 5/19 (26%)
zf-H2C2_2 288..312 CDD:290200 9/39 (23%)
C2H2 Zn finger 304..324 CDD:275368 8/20 (40%)
zf-H2C2_2 319..340 CDD:290200 7/27 (26%)
C2H2 Zn finger 332..352 CDD:275368 2/26 (8%)
zf-C2H2 423..445 CDD:278523 9/38 (24%)
C2H2 Zn finger 425..445 CDD:275368 9/36 (25%)
zf-H2C2_2 437..461 CDD:290200 6/25 (24%)
C2H2 Zn finger 453..537 CDD:275368 26/140 (19%)
COG5048 495..>563 CDD:227381 19/117 (16%)
zf-C2H2 515..537 CDD:278523 6/21 (29%)
zf-H2C2_2 529..552 CDD:290200 9/22 (41%)
C2H2 Zn finger 545..565 CDD:275368 3/31 (10%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335954
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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