DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG30020 and LOC102553962

DIOPT Version :9

Sequence 1:NP_610627.2 Gene:CG30020 / 36156 FlyBaseID:FBgn0050020 Length:1309 Species:Drosophila melanogaster
Sequence 2:XP_006230432.1 Gene:LOC102553962 / 102553962 RGDID:7731019 Length:460 Species:Rattus norvegicus


Alignment Length:350 Identity:86/350 - (24%)
Similarity:129/350 - (36%) Gaps:78/350 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   956 GVK-AEPAV-----PEEEL------DPVTLDAATAV---------------TTTAIAAAISAAAA 993
            ||: |:||:     .|.||      ||......|.|               .|.||....|..|.
  Rat    62 GVRGAKPALICWVEEETELWGPRAQDPELAMCKTEVHSDCRQEEKRRKPREETEAIQRTFSTEAG 126

  Fly   994 ATATSLESPVATTASSSTTLFPTPTPFDFDYDIMRDEAQQSSPNIHDV-SKALSDNASSSCPI-N 1056
            .     :.|..|.|:.||.|           |::..:.||..|....| ::.|..|....|.: .
  Rat   127 P-----KEPHLTFAAPSTNL-----------DLLSKDPQQGPPTSGSVRARVLRANKRHGCHVCG 175

  Fly  1057 ESYKLLST--------------TALETSPAKGLRSNSRLHRS-----SIHICKLCNQTFDELGKL 1102
            :|:....|              ...|.:...|..|:..:||:     ..|.|..|.:.|.:...|
  Rat   176 KSFAQRPTLVEHLYTHTGEKPFQCPECNKCFGRASSLSMHRAIHRGERPHRCPNCEKCFSQRSTL 240

  Fly  1103 VKHEMELHSNT-ERSRWGYQHKCAICNTSYRTLTLLKFHMKRH-SNRKSQCKLCPKSFVTIAELE 1165
            |.|   |:::| ||     ...|..||..:...:.|..|...| ..|..:|..|.::|...:.|.
  Rat   241 VAH---LYTHTGER-----PFCCPDCNKCFGRASSLSTHRAIHRKERPHRCPYCERTFTQRSALT 297

  Fly  1166 RHTKAKHSKDKTLRCFMDGCRKTFAFKHHLIRHQKASHLS-TRYICPVCNKEEKSNVHLKNHMSV 1229
            .|.:. |:.:|...|  ..|.:.|:....|..||:..|.. |.:.|.||.:....:.:|:.||.:
  Rat   298 SHLRV-HTGEKPYCC--ADCGRRFSRSSGLHEHQRVVHSGMTPFSCTVCGRAFADSKYLRRHMRI 359

  Fly  1230 HKGEITYKCPKCDRSYLRRGRLVTH 1254
            |.||..|.||.|.|.:.:...:..|
  Rat   360 HTGEKPYSCPDCGRCFRQGSEIAAH 384

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CG30020NP_610627.2 zf-AD 25..106 CDD:285071
C2H2 Zn finger 369..389 CDD:275368
C2H2 Zn finger 397..418 CDD:275368
C2H2 Zn finger 442..460 CDD:275368
C2H2 Zn finger 730..750 CDD:275368
C2H2 Zn finger 758..777 CDD:275368
C2H2 Zn finger 1089..1110 CDD:275368 6/20 (30%)
C2H2 Zn finger 1124..1144 CDD:275368 5/19 (26%)
C2H2 Zn finger 1151..1172 CDD:275368 5/20 (25%)
C2H2 Zn finger 1180..1203 CDD:275368 6/22 (27%)
C2H2 Zn finger 1210..1230 CDD:275368 6/19 (32%)
C2H2 Zn finger 1238..1254 CDD:275368 4/15 (27%)
LOC102553962XP_006230432.1 KRAB 22..81 CDD:214630 7/18 (39%)
KRAB 22..61 CDD:279668
COG5048 <171..385 CDD:227381 55/224 (25%)
C2H2 Zn finger 171..191 CDD:275368 3/19 (16%)
zf-H2C2_2 184..208 CDD:290200 1/23 (4%)
C2H2 Zn finger 199..219 CDD:275368 5/19 (26%)
zf-H2C2_2 211..236 CDD:290200 6/24 (25%)
C2H2 Zn finger 227..247 CDD:275368 7/22 (32%)
zf-H2C2_2 240..264 CDD:290200 10/31 (32%)
C2H2 Zn finger 255..275 CDD:275368 5/19 (26%)
zf-H2C2_2 267..292 CDD:290200 7/24 (29%)
C2H2 Zn finger 283..303 CDD:275368 5/20 (25%)
zf-H2C2_2 295..320 CDD:290200 7/27 (26%)
C2H2 Zn finger 311..330 CDD:275368 6/20 (30%)
zf-C2H2 338..360 CDD:278523 6/21 (29%)
C2H2 Zn finger 340..360 CDD:275368 6/19 (32%)
zf-H2C2_2 352..377 CDD:290200 11/24 (46%)
C2H2 Zn finger 368..388 CDD:275368 4/16 (25%)