DRSC/TRiP Functional Genomics Resources

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Protein Alignment nclb and AT4G18900

DIOPT Version :9

Sequence 1:NP_610623.1 Gene:nclb / 36150 FlyBaseID:FBgn0263510 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_567565.1 Gene:AT4G18900 / 827624 AraportID:AT4G18900 Length:461 Species:Arabidopsis thaliana


Alignment Length:418 Identity:116/418 - (27%)
Similarity:198/418 - (47%) Gaps:38/418 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    45 DTQQELDEESDDDAEEGENAE---------EDQNDMDVDDHADANSENRDPQDEFQFQEYDNE-- 98
            ||:   :||::|:.|.||.|.         :.....:|....:.:.|..:...|.....||.|  
plant    25 DTE---EEETEDEEENGEVAHAKAVAEEFGKSSKSKNVSSSMELDDEVAEGLKELDMDNYDEEDD 86

  Fly    99 -------ANANVTSLANIVDAGEQIPDEDEDSEAEDEVIKPSDNLILVGHVQDDAASMEVWVFNQ 156
                   ...::...:|.:|...:..|:.:|...:|..|.|:| |::|..:.||..:..:.|:..
plant    87 GIEIFSSGRGDLYYKSNEMDPYLKRNDDHDDDSDDDPPILPTD-LVIVCAMTDDKEANRLDVYVS 150

  Fly   157 EEEA-----LYTHHDFLLPSFPLCIEWMNHDAGSEKAGNMCAIGC-MDPIITVWDLDIQDAIEPT 215
            |:.:     :|.||..::|:.|||..|::......:.||..|:|. ..|.|.:||||....:.|.
plant   151 EDTSHGSPNMYNHHYRIIPAIPLCTAWLDCPLKGGERGNFLAVGSDGTPTIEIWDLDAWFDMLPC 215

  Fly   216 FKLGSKGSRKQNKEQYGHKDAVLDLSWNTNFEHILASGSVDQTVILWDMDEGQPHTTITAFGKQI 280
            .:||.: :::.|.:|..|..:||.|:||..|.:||||.|.|:.|.:||:..|....|:....|::
plant   216 VQLGGQ-NKEGNYKQGSHTRSVLGLAWNKEFRNILASASADKKVKVWDVATGTCKITMEHHTKEV 279

  Fly   281 QSLEFHPQEAQSILTGCADGYVRLFDCRDAEGVNSSSIEWKVDGEVEKVLWHPTQTDYFIVGTND 345
            |::.::....:.:|:|..|..|.|   :|....:.|..:|.|..:||.:.|.|.....|:|...|
plant   280 QAVAWNHYAPEVLLSGSFDQTVVL---KDGRQPSHSGFKWSVMSDVESLAWDPHSEHSFVVSLED 341

  Fly   346 GTLHYADKR------SPGQLLWSVKAHNEEISGVCFNNQKPNLLTSTSTEGTLKVWNFDGTEAKH 404
            ||:...|.|      |.....:::..|:|..:.|.:|...||||.:.|.:.|:|:|:....|...
plant   342 GTVKGFDVRQASISASESNPSFTINGHDEAATSVSYNISAPNLLATGSKDRTVKLWDLSNNEPSC 406

  Fly   405 VYEHEFNMGRLQCMRQCPEDPYTLAFGG 432
            :..|..|.|.|..:...|::|:.||.||
plant   407 IATHNPNAGGLFFIAFSPDNPFLLAMGG 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nclbNP_610623.1 WD40 <189..426 CDD:330360 74/243 (30%)
WD40 repeat 237..274 CDD:293791 17/36 (47%)
WD40 repeat 282..319 CDD:293791 7/36 (19%)
WD40 repeat 326..364 CDD:293791 12/43 (28%)
WD40 repeat 415..454 CDD:293791 7/18 (39%)
AT4G18900NP_567565.1 WD40 <189..460 CDD:225201 78/250 (31%)
WD40 231..>450 CDD:295369 64/207 (31%)
WD40 repeat 236..273 CDD:293791 17/36 (47%)
WD40 repeat 280..309 CDD:293791 7/31 (23%)
WD40 repeat 322..366 CDD:293791 12/43 (28%)
WD40 repeat 374..411 CDD:293791 11/36 (31%)
WD40 repeat 417..442 CDD:293791 7/18 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 101 1.000 Domainoid score I2325
eggNOG 1 0.900 - - E1_KOG0270
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5129
Inparanoid 1 1.050 190 1.000 Inparanoid score I1386
OMA 1 1.010 - - QHG53981
OrthoDB 1 1.010 - - D737539at2759
OrthoFinder 1 1.000 - - FOG0003681
OrthoInspector 1 1.000 - - otm3377
orthoMCL 1 0.900 - - OOG6_102416
Panther 1 1.100 - - LDO PTHR14091
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2553
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.840

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