DRSC/TRiP Functional Genomics Resources

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Protein Alignment nclb and pwp1

DIOPT Version :9

Sequence 1:NP_610623.1 Gene:nclb / 36150 FlyBaseID:FBgn0263510 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_956586.1 Gene:pwp1 / 393262 ZFINID:ZDB-GENE-040426-1049 Length:490 Species:Danio rerio


Alignment Length:466 Identity:180/466 - (38%)
Similarity:277/466 - (59%) Gaps:36/466 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 FVPRGVAKDRPDKIVLTQAELARIIGDTQQEL----DEESDDDAEEG-----ENAEEDQNDMDVD 74
            :|.|||||:.|||:.|::.||.|||.:.::||    :||.:|:|:||     ::.||......|:
Zfish    10 WVKRGVAKETPDKVELSKEELQRIISEAKEELRDRDEEEEEDEADEGVVSGLDSKEEASAPATVE 74

  Fly    75 D----HADANSENRDPQDEFQFQEYDNE--ANANV-TSLANIVDAGEQIPD-----EDEDS-EAE 126
            :    ..|.|.|: |...|:...:||.|  |.:|: .|||.:...|....|     :|.|. |.|
Zfish    75 EGIKKKEDGNEED-DELAEYDLDKYDEEDIATSNLGDSLAGLTVFGTNEEDPYVTIKDTDQYERE 138

  Fly   127 DEVIKPSDNLILVGHVQDDAASMEVWVFNQEEEALYTHHDFLLPSFPLCIEWMNHDAG-SEKAGN 190
            |..|||:|||||.|..:.:..::|:.|:|.||::||.|||.|||::|||:||:|.|.. .|:.||
Zfish   139 DFQIKPTDNLILAGRAEKECCNLEIHVYNSEEDSLYVHHDILLPAYPLCVEWLNFDPNPEEQQGN 203

  Fly   191 MCAIGCMDPIITVWDLDIQDAIEPTFKLGSKGSRKQNKEQ-------YGHKDAVLDLSWNTNFEH 248
            ..|:|.|.|:|.|||||:.|.:||.|.||||..:|:.|:.       .||.|||||||||....:
Zfish   204 YAAVGNMTPVIDVWDLDVVDCLEPAFSLGSKKEKKKKKKAKKAAEPIEGHTDAVLDLSWNRLVRN 268

  Fly   249 ILASGSVDQTVILWDMDEGQPHTTITAFGKQIQSLEFHPQEAQSILTGCADGYVRLFDCRDAEGV 313
            :|||.|.|:||||||:::|:|..|:.....::|:|:|||.|||::::|..|..|.|:|||..:  
Zfish   269 VLASASADETVILWDLEKGKPAATLAKHTDKVQTLKFHPFEAQTLISGSFDKSVILYDCRSPD-- 331

  Fly   314 NSSSIEWKVDGEVEKVLWHPTQTDYFIVGTNDGTLHYADKRSPGQLLWSVKAHNEEISGVCFNNQ 378
            :|..| |:..|:||:|.|.......|:..|.||.::..|.|| .:.:::::||:.|:||:..::|
Zfish   332 DSHRI-WRFSGQVERVTWDHFSPCNFLASTEDGFIYCLDARS-DKPVFTLRAHDGEVSGMDLSSQ 394

  Fly   379 KPNLLTSTSTEGTLKVWNFDGTEAKHVYEHEFNMGRLQCMRQCPEDPYTLAFGGEKPPRCAIFNI 443
            ....|.:.|.:..:|:|:..|.:...::..:..||.|.|...||:.|:..||||:: ....:::|
Zfish   395 IRGCLVTCSADKHVKIWDILGNKPNLIHSRDMKMGVLFCGSCCPDLPFVYAFGGQR-EGLRVWDI 458

  Fly   444 KNSIAVRRTFG 454
            .:..||...||
Zfish   459 SDVAAVAEVFG 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nclbNP_610623.1 WD40 <189..426 CDD:330360 94/243 (39%)
WD40 repeat 237..274 CDD:293791 21/36 (58%)
WD40 repeat 282..319 CDD:293791 15/36 (42%)
WD40 repeat 326..364 CDD:293791 11/37 (30%)
WD40 repeat 415..454 CDD:293791 12/38 (32%)
pwp1NP_956586.1 WD40 <250..>470 CDD:225201 82/225 (36%)
WD40 <250..412 CDD:295369 64/165 (39%)
WD40 repeat 257..294 CDD:293791 21/36 (58%)
WD40 repeat 301..340 CDD:293791 18/41 (44%)
WD40 repeat 343..380 CDD:293791 11/37 (30%)
WD40 375..>469 CDD:295369 25/94 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577893
Domainoid 1 1.000 154 1.000 Domainoid score I4232
eggNOG 1 0.900 - - E1_KOG0270
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5129
Inparanoid 1 1.050 300 1.000 Inparanoid score I2673
OMA 1 1.010 - - QHG53981
OrthoDB 1 1.010 - - D304388at33208
OrthoFinder 1 1.000 - - FOG0003681
OrthoInspector 1 1.000 - - oto39928
orthoMCL 1 0.900 - - OOG6_102416
Panther 1 1.100 - - LDO PTHR14091
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1728
SonicParanoid 1 1.000 - - X2553
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

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