DRSC/TRiP Functional Genomics Resources

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Protein Alignment nclb and SPBC1711.16

DIOPT Version :9

Sequence 1:NP_610623.1 Gene:nclb / 36150 FlyBaseID:FBgn0263510 Length:459 Species:Drosophila melanogaster
Sequence 2:NP_595889.1 Gene:SPBC1711.16 / 2539789 PomBaseID:SPBC1711.16 Length:516 Species:Schizosaccharomyces pombe


Alignment Length:479 Identity:149/479 - (31%)
Similarity:242/479 - (50%) Gaps:45/479 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 IDFVPALCFVPRGVAKDRPDKIVLTQAELARI-------IGDTQQELDEESDDDAEEGENAEED- 67
            :..|.::.|||||.|.:.|....:.:.|..||       :.|.:.:|....:|..:...|.||. 
pombe     1 MSIVSSVAFVPRGYASEFPKSYDIDEIEYERINQLSKLKLEDARADLQSSMEDSNKANGNGEETT 65

  Fly    68 -------QNDMDVDDHADANSENRDPQDEFQFQEYDNEANA----NVTSLANIVDAGEQ------ 115
                   |...:|||  :....|.|..|:.: :|.:.|..|    |:..|| ..:.||:      
pombe    66 DGAEGVLQTSEEVDD--ELKVYNLDTYDDDE-EEAETEGPAAMFSNIRGLA-YHENGEKDPYITI 126

  Fly   116 IPDEDEDSEAEDEVIKPSDNLILVGHVQDDAASMEVWVFNQEEEALYTHHDFLLPSFPLCIEWMN 180
            .|.|.:|.|.|:..|.|:|:|:|....:|:.:.:||:|:...||.||.|||||||:||||:||::
pombe   127 DPQEQDDLEREEMQILPTDSLLLAARTEDNLSHVEVYVYEPTEENLYVHHDFLLPTFPLCLEWLD 191

  Fly   181 HDAG-SEKA-GNMCAIGCMDPIITVWDLDIQDAIEPTFKLGSKGSRKQNKEQYG-------HKDA 236
            :..| |:.| ||..|:|..||.|.:|||||.||:.|...||:..|:...|::..       |.||
pombe   192 YKVGTSDNAPGNYVAVGTFDPEIEIWDLDIIDAVYPAAVLGAGASQVNKKKKKSKKINDSYHTDA 256

  Fly   237 VLDLSWNTNFEHILASGSVDQTVILWDMDEGQPHTTITAFGKQIQSLEFHPQEAQSILTGCADGY 301
            ||.||.|.|..::|.|||.|.|:.|||:.......:.|....::..|:::.:....:|:|..|..
pombe   257 VLALSSNRNAHNLLVSGSADTTLKLWDLSTCNCVKSFTYHSDKVSCLDWYSKAPSVLLSGSYDKT 321

  Fly   302 VRLFDCRDAEGVNSSSIEWKVDGEVEKVLWHPTQTDYFIVGTNDGTLHYADKRSPGQLLWSVKAH 366
            .::.|.|..|..:|    ::|..:||.|.|.....:.|.:||::|.::|.|.|:..:.:|.::||
pombe   322 AKIADLRLEEAPSS----FQVTSDVENVAWDQHSENNFFIGTDNGIVYYCDARNLSKSVWQLQAH 382

  Fly   367 NEEISGVCFNNQKPNLLTSTSTEGTLKVWNFDGTEAKHVYEHEFNMGRL-QCMRQCPED-PYTLA 429
            :..||.:..|...|:.:.:.||:..:|:||...:..|.|...:.::||: .|.....|. .:.||
pombe   383 DGPISCLSVNPSVPSFVATGSTDRVVKLWNTSDSSPKMVVSRDLDVGRVFTCSFTTDESTAFHLA 447

  Fly   430 FGGEKPPRCAIFNIKNSIAVRRTF 453
            ..|.|.. ..:::...:..||:.|
pombe   448 ASGSKGV-VRVWDTATNPGVRKAF 470

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nclbNP_610623.1 WD40 <189..426 CDD:330360 76/245 (31%)
WD40 repeat 237..274 CDD:293791 15/36 (42%)
WD40 repeat 282..319 CDD:293791 8/36 (22%)
WD40 repeat 326..364 CDD:293791 12/37 (32%)
WD40 repeat 415..454 CDD:293791 9/41 (22%)
SPBC1711.16NP_595889.1 WD40 repeat 239..295 CDD:293791 19/55 (35%)
WD40 <253..>467 CDD:225201 61/218 (28%)
WD40 253..462 CDD:295369 61/213 (29%)
WD40 repeat 300..336 CDD:293791 8/39 (21%)
WD40 repeat 343..380 CDD:293791 11/36 (31%)
WD40 repeat 386..424 CDD:293791 11/37 (30%)
WD40 repeat 431..460 CDD:293791 6/29 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 130 1.000 Domainoid score I1335
eggNOG 1 0.900 - - E1_KOG0270
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5129
Inparanoid 1 1.050 222 1.000 Inparanoid score I900
OMA 1 1.010 - - QHG53981
OrthoFinder 1 1.000 - - FOG0003681
OrthoInspector 1 1.000 - - oto100613
orthoMCL 1 0.900 - - OOG6_102416
Panther 1 1.100 - - LDO PTHR14091
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1728
SonicParanoid 1 1.000 - - X2553
TreeFam 1 0.960 - -
1413.860

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