DRSC/TRiP Functional Genomics Resources

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Protein Alignment LTV1 and ltv1

DIOPT Version :9

Sequence 1:NP_001286300.1 Gene:LTV1 / 36146 FlyBaseID:FBgn0027525 Length:493 Species:Drosophila melanogaster
Sequence 2:NP_001120122.1 Gene:ltv1 / 100145145 XenbaseID:XB-GENE-1005068 Length:470 Species:Xenopus tropicalis


Alignment Length:515 Identity:219/515 - (42%)
Similarity:307/515 - (59%) Gaps:78/515 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KKPYIDRKKAVTFHLVHRSQHDPLVTDENAPQRVLLEAAARQQKPKDPEPPTDPAQRQEELKKFG 69
            |||:|.:.||||||||||||.|||..||.|||||||           |....:..:|:||.:.||
 Frog     6 KKPFIKKNKAVTFHLVHRSQRDPLAADETAPQRVLL-----------PAEKVETEKRKEEQRNFG 59

  Fly    70 IHFDDDYDYMQHLKKRENDVVWEFMENPNQ--------ARKQKVQDSEKPGPAPKLMLPSSVFAS 126
            :.|||||:|:||||:|.   ..|.:.:...        ||:..:::.....|.|.:.||||||||
 Frog    60 VFFDDDYNYLQHLKERG---PLELVSSETSKSKSCVIVARESGIEEEPHRFPGPSINLPSSVFAS 121

  Fly   127 EFEESEGMLNKAAP-QTLRLDWDPDVVAALDSDC-----ENEELEDDFVIQA---------MAEG 176
            ||||..|:|||||| :.|.||.|||:|||||.|.     || :|:|||::||         .:..
 Frog   122 EFEEDVGLLNKAAPVRGLCLDLDPDIVAALDDDFNFGDPEN-QLDDDFILQANDPNSDDLRRSSH 185

  Fly   177 DSDDEEWDDEDGEEQSDMDFDSDDLNEDENEDELMDRLAPLMRERRFDDEEVKSRFTEYSMSSSV 241
            :.||::|:|.:.||.   |:|||.|..||::||   ......:|..|..||.|||||||||:|||
 Frog   186 EKDDDDWEDVESEEN---DYDSDGLVSDEDDDE---EGKGARKEFLFMQEETKSRFTEYSMTSSV 244

  Fly   242 IRRNEQLSLLDDRFEKFYATYDDPELGDLALEDIEGNWHQKHPVVMQCFQEF-KKKDKG-IEYNK 304
            |||||||:|||:||||||..:||.|:|.|...::||..|.....:.:...:: |:|.|. ::...
 Frog   245 IRRNEQLTLLDERFEKFYEQFDDDEIGALDNTELEGFIHSNSGRLEEVINDYHKQKAKDCVKLKN 309

  Fly   305 EWDRERIEKYRNVVEGEEDPTEELVEYEVDDPKQKKWDCESILSTYSNIYNHPKVIDEPRRSRRS 369
            ...|:.::   :|:|.:||..|::....:::|:: |||||||||||||:||||::|.:|.:::. 
 Frog   310 LTPRDGMD---SVIEEDEDNKEDMQNLVIEEPRE-KWDCESILSTYSNLYNHPQIIKDPPKAKL- 369

  Fly   370 SASTNPAPIQIDPKTGLPTNVL--RGGVDGQLTAKALANLADESPAATGPKSLCAKSVLSTLSVL 432
                    |::..|||:|.:||  ||     ||||.:..:           .:...|.|..:|. 
 Frog   370 --------IRVSAKTGIPLDVLPARG-----LTAKQVEQM-----------EMINNSDLPRVST- 409

  Fly   433 SIRPKDETHEEKKERKRLLKDYRNERRIEKKANTEAFKEEKKRQTHVKINQRTNQQGASI 492
            .:|||||:.||:|.||:.:|:.|.|||:|||:|..|||.||.||...::|.:.|.||..:
 Frog   410 QLRPKDESKEERKARKQAIKEERKERRVEKKSNKLAFKVEKGRQVKEQLNLKQNLQGLKL 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LTV1NP_001286300.1 LTV 10..462 CDD:282087 200/478 (42%)
ltv1NP_001120122.1 LTV 15..439 CDD:367856 199/474 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 320 1.000 Domainoid score I1237
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H6338
Inparanoid 1 1.050 351 1.000 Inparanoid score I2216
OMA 1 1.010 - - QHG51932
OrthoDB 1 1.010 - - D403171at33208
OrthoFinder 1 1.000 - - FOG0005029
OrthoInspector 1 1.000 - - oto103828
Panther 1 1.100 - - LDO PTHR21531
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R673
SonicParanoid 1 1.000 - - X3551
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1212.110

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