DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12344 and glra4a

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_005169655.1 Gene:glra4a / 83413 ZFINID:ZDB-GENE-010410-3 Length:457 Species:Danio rerio


Alignment Length:465 Identity:153/465 - (32%)
Similarity:229/465 - (49%) Gaps:67/465 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 AFISFGLGFI-LMWLSEATEAHMNYTAKPRVVLPPN------------YVKEIRPPSKKGSPVIV 60
            :|..|..||| |....|..::......||   :.|:            |...|| |:.||.||.|
Zfish    13 SFFFFQGGFIRLGSCKEEIKSSSRPAQKP---MSPSDFLDKLMGRTSGYDARIR-PNFKGPPVNV 73

  Fly    61 DFSIFVVDINSINVEDMDFRVDMFIHQRWLESRL---EIPDDIFEEGDDYVTLLPEVFENFWQPD 122
            ..:||:....||....||:|:::|:.|:|.:.||   |.||...:       |.|.:.::.|:||
Zfish    74 TCNIFINSFGSITETTMDYRLNVFLRQQWNDPRLAYSEYPDASLD-------LDPSMLDSIWKPD 131

  Fly   123 PYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSN 187
            .:|.|.|.|....:|.....:.:::|..|.|:.|:..|::|.|:.:.:|||||.|.:.:|||...
Zfish   132 LFFANEKGANFHEVTTDNKLLRIFQNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYT 196

  Fly   188 NQKVKLRW-SDSGVTLNPELKLLQYNLGQPLELEESD-GYMPE--KVGNFSRLTVYFRFERQIGH 248
            ...:...| ||:.|.:..:|.|.|:.|     .||.| ||..:  ..|.|:.:.|.|..|||:|:
Zfish   197 MNDLIFEWLSDNPVQVADDLTLPQFVL-----KEEKDLGYCTKHYNTGKFTCIEVKFHLERQMGY 256

  Fly   249 HLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTG--ADIPPVAYVKALDLWM 311
            :|||.:.||.|:|:|||.|||:.:||.|.||.|.:|.:||:.|..:|  |.:|.|:||||:|:||
Zfish   257 YLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWM 321

  Fly   312 AGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGGAVRSRKATQ 376
            |.|:|.|||||.|:..|..:..|::..:....|....||..      ..|....|...|......
Zfish   322 AVCLLFVFAALLEYAAVNFVSRQHKEFIRLRKKQRRQRIEE------ELVRESRGFYFRGYGLGH 380

  Fly   377 TPTTPGQTSLQGNG--GPPKP--------ARRQSLLSVAWTDTDTGVEKIMWREIDKVSRAVFPI 431
            ...|...|:::|:.  .||.|        |.|:..:..|             :.||.:||||||:
Zfish   381 CLQTKDGTAVEGSSVFAPPPPVQVLYDGEAVRKRFVDRA-------------KRIDTISRAVFPL 432

  Fly   432 LFFVFVLLYW 441
            .|.:|.:.||
Zfish   433 SFLIFNVFYW 442

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 151/463 (33%)
glra4aXP_005169655.1 LIC 27..445 CDD:273305 147/451 (33%)
Neur_chan_LBD 48..254 CDD:280998 69/218 (32%)
Neur_chan_memb 261..442 CDD:280999 67/199 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.000

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