DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and Gabrp

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_112291.1 Gene:Gabrp / 81658 RGDID:620532 Length:440 Species:Rattus norvegicus


Alignment Length:429 Identity:116/429 - (27%)
Similarity:210/429 - (48%) Gaps:65/429 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEG 104
            |...|.|.:| |:..|.||.:..::.:..|:||:..:||:...:::.|||.:.||     :| ||
  Rat    44 LTAGYNKFLR-PNFGGDPVRIALTLDIASISSISESNMDYTATIYLRQRWTDPRL-----VF-EG 101

  Fly   105 DDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQL 169
            :...||...:.|..|.||.|.:.||.:.:..:|.....:.|:.|.||.||.|:...:.|.|:...
  Rat   102 NKSFTLDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSNGTVLYALRITTTVTCNMDLSK 166

  Fly   170 YPMDIQVCPIYIESFSSNNQKVKLRW---SDSGVTLNPELKLLQYNLGQPLELEESDGYMPEKVG 231
            ||||.|.|.:.:||:..:...|:..|   :||...|. .|:|.||.:.|...|..   ...::.|
  Rat   167 YPMDTQTCKLQLESWGYDGNDVEFSWLRGNDSVRGLE-NLRLAQYTIQQYFTLVT---VSQQETG 227

  Fly   232 NFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA 296
            |::||.:.|...|.:.:.:::|:.||:.:|:|||.|||:.|:::|.|..:.||.:|::.|:..|:
  Rat   228 NYTRLVLQFELRRNVLYFILETYVPSTFLVVLSWVSFWISLESVPARTCIGVTTVLSMTTLMIGS 292

  Fly   297 --DIPPV-AYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIP--KVLPMRISNMEKG 356
              .:|.. .::||:|:::..|...||.||.|:.|.....:|.....:|.|  ....:.|:|:.. 
  Rat   293 RTSLPNTNCFIKAIDVYLGICFSFVFGALLEYAVAHYSSLQQMAVKDRGPAKDSEEVNITNIIN- 356

  Fly   357 QCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTGVE---KIMW 418
              ::::|::      ||.:       ..|::.:|.           :|.::|......   |.::
  Rat   357 --SSISSFK------RKIS-------FASIEISGD-----------NVNYSDLTMKASDKFKFVF 395

  Fly   419 RE----------------IDKVSRAVFPILFFVFVLLYW 441
            ||                :|:.|:.:||::|.:..:.||
  Rat   396 REKIGRIIDYFTIQNPSNVDRYSKLLFPLIFMLANVFYW 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 114/427 (27%)
GabrpNP_112291.1 LIC 43..437 CDD:273305 116/429 (27%)
LGIC_ECD 60..241 CDD:355788 58/190 (31%)
Cys-loop 159..174 CDD:349787 7/14 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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