DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and gabra5

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_005166139.1 Gene:gabra5 / 799124 ZFINID:ZDB-GENE-081104-30 Length:453 Species:Danio rerio


Alignment Length:470 Identity:128/470 - (27%)
Similarity:209/470 - (44%) Gaps:75/470 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SFGLGFILMW------LSEAT-------EAHMNYTAKPRVV--LPPNYVKEIRPPSKKGSPVI-V 60
            |..:|.:.|.      ||::|       |.:.|.|...|::  |...|...:||  ..|..|. :
Zfish    13 SLWVGVLFMTLTCHLSLSQSTTGTPKESELNDNITVFTRILDGLLDGYDNRLRP--GLGEKVTEI 75

  Fly    61 DFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFWQPDPYF 125
            ..:|||.....::..:|::.:|:|..|.|.:.||     .|:...:.:.|...:..|.|.||.:|
Zfish    76 KTNIFVTSFGPVSDTEMEYTIDVFFRQSWKDERL-----CFKGPMEMLPLNNLLASNIWTPDTFF 135

  Fly   126 LNSKIAEIATLTHKFTS----VTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSS 186
            ||.|    .::.|..|:    :.|..:.|:.|..|:.....|.|:.:.:|||...||:...|::.
Zfish   136 LNGK----KSIAHNMTTPNKLLRLKDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAY 196

  Fly   187 NNQKVKLRWS----DSGVTLNPELKLLQYNL-GQPLELEESDGYMPEKVGNFSRLTVYFRFERQI 246
            ...:|..:|:    .|.|......:|.||:| |.....|:    :....|.::.:..:|..:|:|
Zfish   197 PISEVVYKWTKGPGKSVVVAEEGSRLNQYHLIGHTAGTED----ISTSRGQYTVMMAHFYLKRKI 257

  Fly   247 GHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDL 309
            |:.:|||:.|..:.|:||..||||..:::|.|....||.:||:.|:...|  .:|.|||..|:|.
Zfish   258 GYFVIQTYMPCFMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDW 322

  Fly   310 WMAGCMLSVFAALAEFVVVKVL-------DVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGG 367
            ::|.|...||:||.||..|...       |.:...:..:..|..|:.:|.......|.:      
Zfish   323 FIAVCYAFVFSALIEFATVNYFTKRSWAWDGKKALEAQQPKKKDPLALSKKPNNFTANI------ 381

  Fly   368 AVRSRKATQTPTTPGQTSLQGNGGPPKPA--RRQSLLSVAWTDTDTGVEKIMWREIDKVSRAVFP 430
                .|.....|....|::|......|||  .:::..||:              :|||:||.|||
Zfish   382 ----NKDAAISTISNSTTVQLKSAEAKPAPDPKKTYNSVS--------------KIDKMSRIVFP 428

  Fly   431 ILFFVFVLLYWPILL 445
            :||..|.|:||...|
Zfish   429 VLFGTFNLVYWATYL 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 125/464 (27%)
gabra5XP_005166139.1 Neur_chan_LBD 19..442 CDD:332142 125/461 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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