DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and gabra1

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_009293960.1 Gene:gabra1 / 768183 ZFINID:ZDB-GENE-061013-194 Length:470 Species:Danio rerio


Alignment Length:485 Identity:132/485 - (27%)
Similarity:210/485 - (43%) Gaps:93/485 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GLGFILMWL----------------SEATEAHMNYTAKPRVV--LPPNYVKEIRPP-SKKGSPVI 59
            |.|...:|:                ..|.|...|.|...|::  |...|...:||. .::.:.|.
Zfish    16 GRGAAWLWIWACLLVTNALAGKSSSQNADEQKDNTTVFTRILDSLLDGYDNRLRPGLGERVTEVK 80

  Fly    60 VDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVF-ENFWQPDP 123
            .|  |||..|..::..||::.:|:|..|.|.:.||:.      :|...|..|..:. ...|.||.
Zfish    81 TD--IFVTSIGPVSDHDMEYTIDVFFRQSWKDERLKF------KGPMAVLRLNNLMASKIWTPDT 137

  Fly   124 YFLNSK--IAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSS 186
            :|.|.|  :|...|:.:|...:|  :..|:.|..|:.....|.|..:.:|||...||:...|::.
Zfish   138 FFHNGKKSVAHNMTMPNKLLRIT--EEGTLLYTMRLTVRAECPMHLEDFPMDAHACPLKFGSYAY 200

  Fly   187 NNQKVKLRW----------SDSGVTLNPELKLLQYNL-GQPLELEESDGYMPEKVGNFSRLTVYF 240
            ...:|...|          :|.|..||      ||:| ||.::    .|.:....|.:..:|.:|
Zfish   201 TRAEVVYVWTRGAAQSVVVADDGSRLN------QYDLMGQSVD----SGVVQSSTGEYVVMTTHF 255

  Fly   241 RFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAY 303
            ..:|:||:.:|||:.|..:.|:||..||||..:::|.|....||.:||:.|:...|  .:|.|||
Zfish   256 HLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAY 320

  Fly   304 VKALDLWMAGCMLSVFAALAEFVVVKVLDVQ-YQYQVNRIPKVLP----------MRISNMEKGQ 357
            ..|:|.::|.|...||:||.||..|.....: |.:...   .|:|          ::.:|.....
Zfish   321 ATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGK---SVVPEKQKKKKESLLKKNNTYTAA 382

  Fly   358 CAT-----VASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTGVEKIM 417
            .||     :|...|.|..::.|...||.|.:     ...|..|..:::..||:            
Zfish   383 TATAFAPNIARDPGLATIAKSAPPPPTEPKE-----EPKPKPPEAKKTFNSVS------------ 430

  Fly   418 WREIDKVSRAVFPILFFVFVLLYWPILLMK 447
              :||:::|..||:||..|.|:||...|.|
Zfish   431 --KIDRIARIAFPLLFGTFNLVYWATYLNK 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 128/477 (27%)
gabra1XP_009293960.1 LIC 17..455 CDD:273305 129/479 (27%)
Neur_chan_LBD 54..261 CDD:280998 59/226 (26%)
Neur_chan_memb 268..452 CDD:280999 58/205 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.920

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