DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and Gabrq

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_063136356.1 Gene:Gabrq / 65187 RGDID:68331 Length:644 Species:Rattus norvegicus


Alignment Length:430 Identity:120/430 - (27%)
Similarity:207/430 - (48%) Gaps:56/430 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ILMWLSEATEA------HMNYTAK-PRVVLP---------------------PNYVKEIRPPSKK 54
            |..||:|:.:.      |...::. |.|:|.                     ..|...:| |:..
  Rat   135 IRTWLAESNDPSPTPKFHFELSSSMPEVILDLFNCKNCANEAVVQKILDRVLSTYDVRLR-PNFG 198

  Fly    55 GSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFW 119
            |:||.|..||:|..|..|:..:||:.:.||:||.|.::||     .:.|.:..:||...:.|..|
  Rat   199 GAPVPVSISIYVSSIEQISEINMDYTITMFLHQTWKDTRL-----AYYETNLNLTLDYRMHEKLW 258

  Fly   120 QPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESF 184
            .||.||:|||.|.:..:|.:.....|:.:.||:|..|:....||.::.|.:|||.|.|.:.:||:
  Rat   259 VPDCYFVNSKDAFVHDVTAENRVFQLHPDGTVQYGIRLTTTAACSLDLQKFPMDKQSCKLEVESY 323

  Fly   185 SSNNQKVKLRW-SDSGVTLNPELKLLQYN-LGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIG 247
            ....:.:.|.| .|:.:.:..||.:.||. ||:.:..:|...|    .|::.||.|.|:.:|::.
  Rat   324 GYTVEDIVLSWEDDNAIHITDELHIPQYTYLGRTITSKEVYFY----TGSYMRLIVKFQVQREVR 384

  Fly   248 HHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDLW 310
            .:|:|.:.|:.|..:|||.|||:...:...|||:.:|.:|.|.|:.:..  .:|.::.:||:|::
  Rat   385 SYLVQVYWPTVLTTILSWISFWMNYGSSAARVTIGLTSILVLTTIDSHMRDKLPHISCIKAIDIY 449

  Fly   311 MAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGGAVR----- 370
            :..|:..||.:|.|:|.:..|......:.|......|.|:....:.|...||:.:.|.:.     
  Rat   450 ILVCLFFVFLSLLEYVYINYLFFSQAPRRNHRRCRKPRRVVARYRYQEVVVANVQDGLINVEDRV 514

  Fly   371 SRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTD 410
            ..:|...|.:|.|..|         |.::||.|:.:|..:
  Rat   515 EDRAGPLPDSPMQAHL---------ASQESLGSLMFTSEE 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 120/430 (28%)
GabrqXP_063136356.1 None

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