DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment alka and Gabrq

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_065234.1 Gene:Gabrq / 57249 MGIID:1888498 Length:638 Species:Mus musculus


Alignment Length:427 Identity:121/427 - (28%)
Similarity:206/427 - (48%) Gaps:56/427 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ILMWLSEAT------EAHMNYTAK-PRVVLP---------------------PNYVKEIRPPSKK 54
            |..||:|:.      :.|...::. |.|:|.                     ..|...:| |:..
Mouse    16 IRTWLAESNGPSPTPKFHFELSSSTPEVILDLFNCKNCANEAVVQKILDRVLSTYDVRLR-PNFG 79

  Fly    55 GSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFW 119
            |:||.|..||:|..|..|:..:||:.:.||:||.|.::||     .:.|.:..:||...:.|..|
Mouse    80 GAPVPVSVSIYVSSIEQISEINMDYTITMFLHQTWKDTRL-----AYYETNLNLTLDYRMHEKLW 139

  Fly   120 QPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESF 184
            .||.||:|||.|.:..:|.:.....|:.:.||||..|:....||.::.|.:|||.|.|.:.:||:
Mouse   140 VPDCYFVNSKDAFVHDVTVENRVFQLHPDGTVRYGIRLTTTAACSLDLQKFPMDKQSCKLEVESY 204

  Fly   185 SSNNQKVKLRW-SDSGVTLNPELKLLQYN-LGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIG 247
            ....:.:.|.| .|:.:.:...|.:.||. ||:.:..:|...|    .|::.||.|.|:.:|::.
Mouse   205 GYTVEDIVLSWEDDNAIHITDGLHIPQYTYLGRTITSKEVYFY----TGSYMRLIVKFQVQREVR 265

  Fly   248 HHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDLW 310
            .:|:|.:.|:.|..:|||.|||:..|:...|||:.:|.:|.|.|:.:..  .:|.::.:||:|::
Mouse   266 SYLVQVYWPTVLTTILSWISFWMNYDSSAARVTIGLTSILVLTTIDSHMRDKLPHISCIKAIDIY 330

  Fly   311 MAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGGAVR----- 370
            :..|:..||.:|.|:|.:..|......:.|......|.|:....:.|...||:.:.|.:.     
Mouse   331 ILVCLFFVFLSLLEYVYINYLFFSQVPRRNHRRCRKPRRVVARYRYQEVVVANVQDGLINVEDRV 395

  Fly   371 SRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWT 407
            ..:|...|.:|.|..|         |.::||.|:.:|
Mouse   396 EDRAGPLPDSPMQAHL---------ASQESLGSLVFT 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 121/427 (28%)
GabrqNP_065234.1 LGIC_ECD_GABAAR_theta 82..263 CDD:349804 62/189 (33%)
Cys-loop 183..197 CDD:349804 6/13 (46%)
LGIC_TM_GABAAR_theta 266..365 CDD:349858 30/98 (31%)
TM1 helix 266..289 CDD:349858 10/22 (45%)
TM2 helix 293..317 CDD:349858 7/23 (30%)
TM3 helix 325..351 CDD:349858 9/25 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 491..515
LGIC_TM <604..636 CDD:476813
TM4 helix 612..633 CDD:349858
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.