Sequence 1: | NP_001286298.1 | Gene: | CG12344 / 36145 | FlyBaseID: | FBgn0033558 | Length: | 449 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_065234.1 | Gene: | Gabrq / 57249 | MGIID: | 1888498 | Length: | 638 | Species: | Mus musculus |
Alignment Length: | 427 | Identity: | 121/427 - (28%) |
---|---|---|---|
Similarity: | 206/427 - (48%) | Gaps: | 56/427 - (13%) |
- Green bases have known domain annotations that are detailed below.
Fly 18 ILMWLSEAT------EAHMNYTAK-PRVVLP---------------------PNYVKEIRPPSKK 54
Fly 55 GSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFW 119
Fly 120 QPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESF 184
Fly 185 SSNNQKVKLRW-SDSGVTLNPELKLLQYN-LGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIG 247
Fly 248 HHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDLW 310
Fly 311 MAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGGAVR----- 370
Fly 371 SRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWT 407 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG12344 | NP_001286298.1 | LIC | 8..441 | CDD:273305 | 121/427 (28%) |
Gabrq | NP_065234.1 | LGIC_ECD_GABAAR_theta | 82..263 | CDD:349804 | 62/189 (33%) |
Cys-loop | 183..197 | CDD:349804 | 6/13 (46%) | ||
LGIC_TM_GABAAR_theta | 266..365 | CDD:349858 | 30/98 (31%) | ||
TM1 helix | 266..289 | CDD:349858 | 10/22 (45%) | ||
TM2 helix | 293..317 | CDD:349858 | 7/23 (30%) | ||
TM3 helix | 325..351 | CDD:349858 | 9/25 (36%) | ||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 491..515 | ||||
LGIC_TM | <604..636 | CDD:365787 | |||
TM4 helix | 612..633 | CDD:349850 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_KOG3644 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.810 |