DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12344 and Gabrq

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_065234.1 Gene:Gabrq / 57249 MGIID:1888498 Length:638 Species:Mus musculus


Alignment Length:427 Identity:121/427 - (28%)
Similarity:206/427 - (48%) Gaps:56/427 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ILMWLSEAT------EAHMNYTAK-PRVVLP---------------------PNYVKEIRPPSKK 54
            |..||:|:.      :.|...::. |.|:|.                     ..|...:| |:..
Mouse    16 IRTWLAESNGPSPTPKFHFELSSSTPEVILDLFNCKNCANEAVVQKILDRVLSTYDVRLR-PNFG 79

  Fly    55 GSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFW 119
            |:||.|..||:|..|..|:..:||:.:.||:||.|.::||     .:.|.:..:||...:.|..|
Mouse    80 GAPVPVSVSIYVSSIEQISEINMDYTITMFLHQTWKDTRL-----AYYETNLNLTLDYRMHEKLW 139

  Fly   120 QPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESF 184
            .||.||:|||.|.:..:|.:.....|:.:.||||..|:....||.::.|.:|||.|.|.:.:||:
Mouse   140 VPDCYFVNSKDAFVHDVTVENRVFQLHPDGTVRYGIRLTTTAACSLDLQKFPMDKQSCKLEVESY 204

  Fly   185 SSNNQKVKLRW-SDSGVTLNPELKLLQYN-LGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIG 247
            ....:.:.|.| .|:.:.:...|.:.||. ||:.:..:|...|    .|::.||.|.|:.:|::.
Mouse   205 GYTVEDIVLSWEDDNAIHITDGLHIPQYTYLGRTITSKEVYFY----TGSYMRLIVKFQVQREVR 265

  Fly   248 HHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDLW 310
            .:|:|.:.|:.|..:|||.|||:..|:...|||:.:|.:|.|.|:.:..  .:|.::.:||:|::
Mouse   266 SYLVQVYWPTVLTTILSWISFWMNYDSSAARVTIGLTSILVLTTIDSHMRDKLPHISCIKAIDIY 330

  Fly   311 MAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGGAVR----- 370
            :..|:..||.:|.|:|.:..|......:.|......|.|:....:.|...||:.:.|.:.     
Mouse   331 ILVCLFFVFLSLLEYVYINYLFFSQVPRRNHRRCRKPRRVVARYRYQEVVVANVQDGLINVEDRV 395

  Fly   371 SRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWT 407
            ..:|...|.:|.|..|         |.::||.|:.:|
Mouse   396 EDRAGPLPDSPMQAHL---------ASQESLGSLVFT 423

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 121/427 (28%)
GabrqNP_065234.1 LGIC_ECD_GABAAR_theta 82..263 CDD:349804 62/189 (33%)
Cys-loop 183..197 CDD:349804 6/13 (46%)
LGIC_TM_GABAAR_theta 266..365 CDD:349858 30/98 (31%)
TM1 helix 266..289 CDD:349858 10/22 (45%)
TM2 helix 293..317 CDD:349858 7/23 (30%)
TM3 helix 325..351 CDD:349858 9/25 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 491..515
LGIC_TM <604..636 CDD:365787
TM4 helix 612..633 CDD:349850
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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