Protein Alignment alka and gabrr3a

DIOPT Version :10

• Sequence 1: NP_610619.2
• Gene: alka / 36145
• FlyBaseID: FBgn0033558
• Length: 449
• Species: Drosophila melanogaster
• Sequence 2: NP_001122232.1
• Gene: gabrr3a / 570876
• ZFINID: ZDB-GENE-080722-20
• Length: 472
• Species: Danio rerio
• Alignment Length: 413
• Identity: 117/413 - (28%)
• Similarity: 195/413 - (47%)
• Gaps: 44/413 - (10%)

  Fly    51 PSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVF 115
            |...||.:.|...:.|..|:.|:..:|||.:.:::...|.:.||..|    ...:...|....:.
Zfish    82 PGFGGSAIPVGIDVQVESIDGISEVNMDFTMTLYLRHYWQDDRLAFP----SSNNKSRTFDARLV 142

  Fly   116 ENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIY 180
            :..|.||.:|::||.:.|...|.:...:.::.:..:.|:.|:.....|.|:|..:|:|.|.|.:.
Zfish   143 KKIWVPDVFFVHSKRSFIHDTTMENIMLRVFPDGNILYSVRITVTALCSMDFSRFPLDTQNCSLE 207

  Fly   181 IESFSSNNQKVKLRWSDSGVTL-NPELKLLQYNLGQPLELEESDGY-MPEKVGNFSRLTVYFRFE 243
            :||::.|...:.|.|.:...:| ..|:.|.|:.:.   |...|.|. .....|.::||.:.|...
Zfish   208 LESYAYNENDLMLYWKNGNDSLRTDEIALSQFFIE---EFHPSYGLAFYSSTGWYNRLYINFILR 269

  Fly   244 RQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTG--ADIPPVAYVKA 306
            |.|...::||:.|:.|:|||||.|||:...|:|.||:|.:|.:||:.|:.||  |.:|.|:||||
Zfish   270 RHIFFFMLQTYFPTMLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITGVSASMPQVSYVKA 334

  Fly   307 LDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQC-----ATVASWEG 366
            :|:::....|.||.::.|:..     |.|...|..:.|        ::||:.     ||.|....
Zfish   335 VDIYLWASFLFVFLSVIEYAA-----VNYFTTVEEMKK--------LQKGKLPASYDATQAMAYD 386

  Fly   367 GA----VRSRKATQTPTTPGQT---SLQGNGGPPKPARRQSLLSVAWTDTDTG--VEKIMWRE-- 420
            |.    :.:....:.||||..|   ..:.:...|.|.....|    |.....|  :..||...
Zfish   387 GCFHDDIDASPFPELPTTPSTTRTIPARASSTEPPPTEGTRL----WRKRSVGKNIRFIMSNSYM 447

  Fly   421 IDKVSRAVFPILFFVFVLLYWPI 443
            ||..||.:||:.:.:|.::||.|
Zfish   448 IDSYSRILFPLAYLLFNIIYWCI 470

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
alka	NP_610619.2	LIC	8..441	CDD:455710	114/409 (28%)
gabrr3a	NP_001122232.1	LIC	67..471	CDD:455710	117/413 (28%)
		LGIC_ECD	88..272	CDD:475126	46/190 (24%)