DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and gabrr2b

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_068071705.2 Gene:gabrr2b / 569032 ZFINID:ZDB-GENE-041014-174 Length:466 Species:Danio rerio


Alignment Length:472 Identity:130/472 - (27%)
Similarity:219/472 - (46%) Gaps:76/472 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLDKFNTNAFISFGLGFILMWLSEATEAHMNYTAKPRVVLPPNYVKEIRPPSKKGSPVIVDFSIF 65
            |||:..|:|..|..|      ||  .|.| ::|.:|....|             ..||.||  :.
Zfish    44 MLDETKTHAVKSEHL------LS--VEDH-DFTMRPAFAGP-------------AVPVGVD--VQ 84

  Fly    66 VVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKI 130
            |..::||:..||||.:.:::...|.:.||..|    .:.:..:|....:.:..|.||.:|::||.
Zfish    85 VESLDSISEVDMDFTMTLYLRHYWKDERLSFP----SKHNKSMTFDGRLVKKIWVPDVFFVHSKR 145

  Fly   131 AEIATLTHKFTSVTLYKNKTVRYAA--RMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKL 193
            :.|...|.:...:.:|.:..|.|:.  |:....||.|:|..:|:|.|.|.:.:||::..::.:.|
Zfish   146 SFIHDTTTENIMIRVYPDGHVLYSLSFRVTVTSACNMDFSRFPLDTQTCTLELESYAYTDEDLML 210

  Fly   194 RW--SDSGVTLNPELKLLQ-----YNLGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLI 251
            .|  .|..::.:.::.|.|     ::....|....|.|:       ::||.:.|...|.|...|:
Zfish   211 YWKSGDESLSTDDKISLSQFLIQKFHTTSRLAFYSSTGW-------YNRLYINFTLRRHIFFFLL 268

  Fly   252 QTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTG--ADIPPVAYVKALDLWMAGC 314
            ||:.|::|:|||||.|||:...|:|.||:|.:|.:||:.|:.||  |.:|.|:|:||:|:::...
Zfish   269 QTYFPATLMVMLSWVSFWIDRRAVPARVSLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVS 333

  Fly   315 MLSVFAALAEFVVVKVLDVQYQYQVNRI-PKVLPMRISNMEKGQCATVASWEGGAVRSRKATQTP 378
            .:.||.::.|:..|..|...:.....:: .|.||        |.|      :..::|:....:..
Zfish   334 FVFVFLSVLEYAAVNYLTTVHDGTDRKLRQKTLP--------GTC------DISSMRTMMLNEAY 384

  Fly   379 TTPGQTSLQG----NGGPPKPARRQSLLSV----------AWTDTDTGVEKIM-WREIDKVSRAV 428
            ..|....|.|    .....:||.:|..::|          |...|..|:..|. ...||..||.:
Zfish   385 GRPESNGLAGYTQTTVSSEEPAEKQDPMAVCLSIGPEVKGAKKRTLRGLRIIQNTHAIDAYSRMI 449

  Fly   429 FPILFFVFVLLYWPILL 445
            ||..|..|.|:||.:.|
Zfish   450 FPGAFIFFNLIYWSVYL 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 123/459 (27%)
gabrr2bXP_068071705.2 None

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