DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and gabrg3

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_009300843.1 Gene:gabrg3 / 567057 -ID:- Length:464 Species:Danio rerio


Alignment Length:469 Identity:116/469 - (24%)
Similarity:192/469 - (40%) Gaps:105/469 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 SEATEAHMNYTAKPRVVLPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQ 87
            ::||:...|        |...|.|::||.... .|.::|..|:|..|..::..:|::::|:...|
Zfish    45 TDATQILNN--------LLKEYDKKLRPDIGV-KPTVIDVDIYVNSIGPVSSINMEYQIDIIFAQ 100

  Fly    88 RWLESRLEIPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVR 152
            .|.:|||.     :......:||...:....|.||..|.|||.|:...:|.....:.::.:..:.
Zfish   101 TWTDSRLR-----YNSTMKILTLNSNMVGLIWLPDTIFRNSKSADSHWITTPNQLLRIWNDGKIL 160

  Fly   153 YAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWSDSGVTL--NPELKLLQYNLGQ 215
            |..|:.....||::...:|||...||:...|:.....::..:|..:.|..  ....:|.|::.  
Zfish   161 YTLRLTINAECQLQLHNFPMDEHSCPLIFSSYGYPRDEMIYKWRRNSVQAADQKSWRLYQFDF-- 223

  Fly   216 PLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVT 280
             :.|..:...:....|::..:||||...|::|:..|||:.|..|.|:|||.|||:..||.|.|..
Zfish   224 -MGLRNTTDVIKTTAGDYVVMTVYFDLSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTA 287

  Fly   281 LL-----------------VTCMLTLVTMFTGA--DIPPVAYVKALDLWMAGCMLSVFAALAEFV 326
            |:                 :|.:||:.|:.|.|  .:|.|:||.|:||::..|.|.|||||.|:.
Zfish   288 LVSCFKSMSCPGKCHCCQGITTVLTMTTLSTVARTSLPRVSYVTAMDLFVTVCFLFVFAALMEYA 352

  Fly   327 VVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGG 391
            .:.    .|.|.                                :|:.|...|.....|:...|.
Zfish   353 TLN----YYSYS--------------------------------ARRPTCNKTKRSNYSVLDVGP 381

  Fly   392 PPKPARRQSLLSVAWTDTDTG-VEKIM-------------------WR---------EIDKVSRA 427
            ||......:  |:.|.:.|.. |.:.:                   ||         |:|..||.
Zfish   382 PPTVITLNN--SMYWQEFDDACVYECLDGKDCQSFFCCYEECKDGAWRKGRVHIDILELDAYSRV 444

  Fly   428 VFPILFFVFVLLYW 441
            .||..|.:|.::||
Zfish   445 FFPTSFLLFNVVYW 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 114/467 (24%)
gabrg3XP_009300843.1 Neur_chan_LBD 47..253 CDD:280998 52/222 (23%)
LIC 49..461 CDD:273305 114/465 (25%)
Neur_chan_memb 260..458 CDD:280999 59/235 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1057372at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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