DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and gabrb3

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_021327485.1 Gene:gabrb3 / 566922 ZFINID:ZDB-GENE-101102-2 Length:532 Species:Danio rerio


Alignment Length:486 Identity:131/486 - (26%)
Similarity:214/486 - (44%) Gaps:114/486 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 NYVKE----------IR-PPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLE- 95
            ::|||          || .|...|:||.|..||.|..|:.::..:||:.:.|:..|.|.:.||. 
Zfish    69 SFVKETVDKLLKGYDIRLRPDFGGAPVAVGMSIDVASIDMVSEVNMDYTLTMYFQQYWRDKRLAY 133

  Fly    96 --IPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMH 158
              ||.::        ||...|.:..|.||.||||.|.:.:..:|.|...:.|:.:.||.|..|:.
Zfish   134 TGIPLNL--------TLDNRVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRIT 190

  Fly   159 AIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRW--SDSGVTLNPELKLLQYNLGQPLELEE 221
            ...||.|:.:.||:|.|.|.:.|||:......::..|  .::.||....::|.|:::   ::.:.
Zfish   191 TTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIEFYWKGGETAVTGVSRIELPQFSI---VDYKL 252

  Fly   222 SDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCM 286
            ....:....|.:.||::.|:.:|.||:.::||:.||.|:.:|||.|||:..||...||.|.:|.:
Zfish   253 VSRNVVFSTGAYPRLSLSFKLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTV 317

  Fly   287 LTLVTMFT--GADIPPVAYVKALDLWMAGCMLSVFAALAEFVVV--------------------K 329
            ||:.|:.|  ...:|.:.||||:|:::.||.:.||.||.|:..|                    |
Zfish   318 LTMTTINTHLRETLPKIPYVKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQMQKKLAEKAEK 382

  Fly   330 VLDVQYQYQVNRIPKVLPMRISNMEKGQCATVASWEGGAVRSRKATQTPTTPGQ---TSLQ---- 387
            ..:.:.:|..|:         |..|.|.|...:..:...|:..:.::...:.|.   |:|:    
Zfish   383 ANNDRNKYDGNK---------SVQEGGNCKPSSVKQSNQVQGHRHSRGVDSQGNILLTTLEIHNE 438

  Fly   388 ---------------------GNGG--------------------PPKPARRQSLLSVAWTD-TD 410
                                 .|.|                    .|:..||.|.|.:...| ||
Zfish   439 VAGNEITTSVSEARNSTSMVFDNSGIQYRKQSTARHSMDRNAQSKKPRLRRRSSQLKIKIPDLTD 503

  Fly   411 TGVEKIMWREIDKVSRAVFPILFFVFVLLYW 441
            ...       ||:.||.:||.:|.:|.|:||
Zfish   504 VNA-------IDRWSRIIFPAVFSLFNLIYW 527

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 129/484 (27%)
gabrb3XP_021327485.1 LIC 61..530 CDD:273305 131/486 (27%)

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