DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and gabrp

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_005173350.1 Gene:gabrp / 566633 ZFINID:ZDB-GENE-081028-62 Length:464 Species:Danio rerio


Alignment Length:492 Identity:127/492 - (25%)
Similarity:225/492 - (45%) Gaps:89/492 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NAFISFGLGF------ILMWLS------------------EATEAHMNYTAKPRVVLPPNYVKEI 48
            :::.|.||.:      :|.|.|                  |..::.:..|.:.   |...|.:.:
Zfish     8 HSYQSSGLHYHRMLLNLLFWTSLFLLITNGERGFYGNQYGEWNDSQLQPTIQK---LMKGYNRYL 69

  Fly    49 RPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPE 113
            ||...:| ||.:..|:.:..|::|:..:||:...:|:.|||.:|||..|      |::.::|...
Zfish    70 RPNFNEG-PVEIGMSLDIASIDAISEINMDYTATIFLRQRWRDSRLIFP------GNESLSLDGR 127

  Fly   114 VFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCP 178
            :....|.||.:..:||.:.:..:|.:...:.::.|.||.||.|:.|.|||.|:...||||.|.|.
Zfish   128 LVSLLWIPDTFIPDSKRSFLHDVTVENRLIRIFSNGTVLYALRITATIACNMDLTKYPMDRQECT 192

  Fly   179 IYIESFSSNNQKVKLRW---SDSGVTLNPELKLLQYNLGQPLELEESDGYMPE------KVGNFS 234
            :.:||:..|.:.|...|   :||...|: .|:|.||::         :.|...      :.|.:.
Zfish   193 LQLESWGYNLEDVVFYWTRGNDSVKGLD-TLRLAQYSV---------ESYYTSVTKAVYETGLYP 247

  Fly   235 RLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--D 297
            :|.::|...|.:...:::|:.||:|:|:|||.|||:...::|.|..:.||.:||:.|:..||  .
Zfish   248 KLILHFALRRNVLFFILETYVPSTLLVVLSWVSFWISQSSVPARTCIGVTTVLTMTTLMMGARTS 312

  Fly   298 IPPV-AYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVL---------PMRISN 352
            :|.. .::||:|:::..|...:|.||.|:.......:|:|..::...::|         ...:|:
Zfish   313 LPNANCFIKAIDVYLGICFTFIFGALLEYACAHFCTMQHQTIIDVQRELLKEFEESNGTTHLVSS 377

  Fly   353 MEKGQCATVASWEGGAVRSRKATQTPTTP-----GQTSLQGNG---GPPKPARRQSLLSVAWTDT 409
            |...:..|..|     .:..|..||.|..     .||..:|.|   ......|..|::||...  
Zfish   378 MSPRKMKTEDS-----TKQEKPEQTVTCEENEAIEQTKEKGCGLTTVKQMSRRAASMMSVENP-- 435

  Fly   410 DTGVEKIMWREIDKVSRAVFPILFFVFVLLYWPILLM 446
                     ..||:.:|.:||:.|.:..:.||...|:
Zfish   436 ---------HNIDRHARILFPMAFLLINIFYWLYYLL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 124/485 (26%)
gabrpXP_005173350.1 Neur_chan_LBD 21..461 CDD:332142 123/475 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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