DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and gabrp

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_005173350.2 Gene:gabrp / 566633 ZFINID:ZDB-GENE-081028-62 Length:464 Species:Danio rerio


Alignment Length:492 Identity:127/492 - (25%)
Similarity:225/492 - (45%) Gaps:89/492 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 NAFISFGLGF------ILMWLS------------------EATEAHMNYTAKPRVVLPPNYVKEI 48
            :::.|.||.:      :|.|.|                  |..::.:..|.:.   |...|.:.:
Zfish     8 HSYQSSGLHYHRMLLNLLFWTSLFLLITNGERGFYGNQYGEWNDSQLQPTIQK---LMKGYNRYL 69

  Fly    49 RPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPE 113
            ||...:| ||.:..|:.:..|::|:..:||:...:|:.|||.:|||..|      |::.::|...
Zfish    70 RPNFNEG-PVEIGMSLDIASIDAISEINMDYTATIFLRQRWRDSRLIFP------GNESLSLDGR 127

  Fly   114 VFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCP 178
            :....|.||.:..:||.:.:..:|.:...:.::.|.||.||.|:.|.|||.|:...||||.|.|.
Zfish   128 LVSLLWIPDTFIPDSKRSFLHDVTVENRLIRIFSNGTVLYALRITATIACNMDLTKYPMDRQECT 192

  Fly   179 IYIESFSSNNQKVKLRW---SDSGVTLNPELKLLQYNLGQPLELEESDGYMPE------KVGNFS 234
            :.:||:..|.:.|...|   :||...|: .|:|.||::         :.|...      :.|.:.
Zfish   193 LQLESWGYNLEDVVFYWTRGNDSVKGLD-TLRLAQYSV---------ESYYTSVTKAVYETGLYP 247

  Fly   235 RLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--D 297
            :|.::|...|.:...:::|:.||:|:|:|||.|||:...::|.|..:.||.:||:.|:..||  .
Zfish   248 KLILHFALRRNVLFFILETYVPSTLLVVLSWVSFWISQSSVPARTCIGVTTVLTMTTLMMGARTS 312

  Fly   298 IPPV-AYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVL---------PMRISN 352
            :|.. .::||:|:::..|...:|.||.|:.......:|:|..::...::|         ...:|:
Zfish   313 LPNANCFIKAIDVYLGICFTFIFGALLEYACAHFCTMQHQTIIDVQRELLKEFEESNGTTHLVSS 377

  Fly   353 MEKGQCATVASWEGGAVRSRKATQTPT-----TPGQTSLQGNG---GPPKPARRQSLLSVAWTDT 409
            |...:..|..|     .:..|..||.|     ...||..:|.|   ......|..|::||...  
Zfish   378 MSPRKMKTEDS-----TKQEKPEQTVTCEENEAVEQTKEKGCGLTTVKQMSRRAASMMSVENP-- 435

  Fly   410 DTGVEKIMWREIDKVSRAVFPILFFVFVLLYWPILLM 446
                     ..||:.:|.:||:.|.:..:.||...|:
Zfish   436 ---------HNIDRHARILFPMAFLLINIFYWLYYLL 463

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 124/485 (26%)
gabrpXP_005173350.2 None

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