DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and gabrb4

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:XP_005173931.1 Gene:gabrb4 / 566514 ZFINID:ZDB-GENE-070424-211 Length:512 Species:Danio rerio


Alignment Length:507 Identity:145/507 - (28%)
Similarity:221/507 - (43%) Gaps:98/507 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 LGFILMWLSEATEAHMNYTAKPRV-VLPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMD 78
            |.|:....|.:|.:.....||..| .|...|...:| |...|.||||..||.:..|:||:..:||
Zfish    19 LSFVCFAQSSSTGSTGISVAKTTVDKLLKGYDIRLR-PDFGGPPVIVGMSINIASIDSISEVNMD 82

  Fly    79 FRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSV 143
            :.:.|:..|.|.:.||     .:.|....:||...|.:..|.||.||||.|.:.:..:|.|...:
Zfish    83 YTITMYFQQSWRDKRL-----AYAEMALNLTLDNRVADQLWLPDTYFLNDKKSFLHGVTVKNRMI 142

  Fly   144 TLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRW--SDSGVTLNPEL 206
            .|:.:.||.|..|:....||.|:.:.||:|.|.|.:.|||:......:...|  .|:.||...:|
Zfish   143 RLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNCTLEIESYGYTTDDIVFFWQGGDNAVTGVDKL 207

  Fly   207 KLLQYNLGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLG 271
            :|.|:::   :||......:....|::.||::.||.:|.||:.::||:.||.|:.:|||.|||:.
Zfish   208 ELPQFSI---VELRLVSREVRFTTGSYPRLSLSFRIKRNIGYFILQTYMPSILITILSWVSFWIN 269

  Fly   272 LDAIPGRVTLLVTCMLTLVTMFT--GADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVL--- 331
            .||...||.|.||.:||:.|:.|  ...:|.:.||||:|:::.||.:.||.||.|:..|..:   
Zfish   270 YDASAARVALGVTTVLTMTTINTHLRETLPKIPYVKAIDVYLMGCFVFVFLALLEYAFVNYVFFG 334

  Fly   332 -DVQYQYQVN-RIPK-------------------------------------------------- 344
             ..|.|.::| |:.|                                                  
Zfish   335 RGPQQQKKINERLNKANNERPRYEEKRLREQDSISAPFQSNTLRSYTQRRNLYLEEQRKVGVDAY 399

  Fly   345 -------------VLPMRISNMEKGQCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKP- 395
                         |:|..:.:.......:|.|::...|:.||...:.......||..:....:. 
Zfish   400 GNILLTTLEMNNEVMPSDVGSSVSDSRNSVMSFDSSGVQFRKPMGSRDGFSHHSLDRSAMRSRAN 464

  Fly   396 ---ARRQSLLSVA---WTDTDTGVEKIMWREIDKVSRAVFPILFFVFVLLYW 441
               .||.|.|.:.   .||..|         |||.||.:|||.|..|.|:||
Zfish   465 CRLRRRSSKLKLKIPNLTDVST---------IDKWSRIIFPITFGFFNLIYW 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 143/505 (28%)
gabrb4XP_005173931.1 LIC 13..510 CDD:273305 145/507 (29%)

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