DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and GABRQ

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_061028.3 Gene:GABRQ / 55879 HGNCID:14454 Length:632 Species:Homo sapiens


Alignment Length:405 Identity:120/405 - (29%)
Similarity:195/405 - (48%) Gaps:48/405 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 ILMWLSEAT------EAHMNY-TAKPRVVLP---------------------PNYVKEIRPPSKK 54
            |..||:|..      :.|..: :|.|.|||.                     ..|...:| |:..
Human    16 IRTWLAEGNYPSPIPKFHFEFSSAVPEVVLNLFNCKNCANEAVVQKILDRVLSRYDVRLR-PNFG 79

  Fly    55 GSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFW 119
            |:||.|..||:|..|..|:..:||:.:.||.||.|.:|||     .:.|....:||...:.|..|
Human    80 GAPVPVRISIYVTSIEQISEMNMDYTITMFFHQTWKDSRL-----AYYETTLNLTLDYRMHEKLW 139

  Fly   120 QPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESF 184
            .||.||||||.|.:..:|.:.....|:.:.||||..|:....||.::...:|||.|.|.:.:||:
Human   140 VPDCYFLNSKDAFVHDVTVENRVFQLHPDGTVRYGIRLTTTAACSLDLHKFPMDKQACNLVVESY 204

  Fly   185 SSNNQKVKLRWSDSG--VTLNPELKLLQYN-LGQPLELEESDGYMPEKVGNFSRLTVYFRFERQI 246
            ....:.:.|.|.|:|  :.:..||.:.|:. ||:.:..:|...|    .|::.||.:.|:.:|::
Human   205 GYTVEDIILFWDDNGNAIHMTEELHIPQFTFLGRTITSKEVYFY----TGSYIRLILKFQVQREV 265

  Fly   247 GHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA--DIPPVAYVKALDL 309
            ..:|:|.:.|:.|..:.||.|||:..|:...|||:.:|.||.|.|:.:..  .:|.::.:||:|:
Human   266 NSYLVQVYWPTVLTTITSWISFWMNYDSSAARVTIGLTSMLILTTIDSHLRDKLPNISCIKAIDI 330

  Fly   310 WMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPK--VLPMRISNMEKGQCATVASWEGGAVRSR 372
            ::..|:..||.:|.|:|.:..|  .|.....|.|:  ..|.|:....:.|...|.:.:.|.:...
Human   331 YILVCLFFVFLSLLEYVYINYL--FYSRGPRRQPRRHRRPRRVIARYRYQQVVVGNVQDGLINVE 393

  Fly   373 KATQT-PTTPGQTSL 386
            ....: |.||.|..|
Human   394 DGVSSLPITPAQAPL 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 120/405 (30%)
GABRQNP_061028.3 LGIC_ECD_GABAAR_theta 82..264 CDD:349804 63/190 (33%)
Cys-loop 183..197 CDD:349804 5/13 (38%)
LGIC_TM_GABAAR_theta 267..>355 CDD:349858 29/89 (33%)
TM1 helix 267..290 CDD:349858 9/22 (41%)
TM2 helix 294..318 CDD:349858 8/23 (35%)
TM3 helix 326..352 CDD:349858 9/25 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 410..458
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 491..523
LGIC_TM <598..630 CDD:476813
TM4 helix 606..627 CDD:349850
Blue background indicates that the domain is not in the aligned region.

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