DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and nAChRbeta2

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_524483.1 Gene:nAChRbeta2 / 42920 FlyBaseID:FBgn0004118 Length:519 Species:Drosophila melanogaster


Alignment Length:371 Identity:81/371 - (21%)
Similarity:161/371 - (43%) Gaps:57/371 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FILMWLSEATEAHMNYTAKPRVV-----LPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVED 76
            |:|:.|:.:| |.:::.|.|...     |..||.:.|||.......:.|...:.:..:..:|:::
  Fly    10 FLLVPLANST-APISFEANPDTKRLYDDLLSNYNRLIRPVVNNTETLTVWLGLKLSQLIEVNLKN 73

  Fly    77 MDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFT 141
            .....::::.|||.:.:|..  |..|.|......:|.  |:.|.||....|:.....        
  Fly    74 QVMTTNLWVKQRWFDYKLRW--DPEEYGGVEQLYVPS--EHIWVPDIVLYNNWDGNY-------- 126

  Fly   142 SVTLYKNKTVRYAARMH----AII--ACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRWSDS-- 198
            .|||....|::|...:.    ||.  :|:|..:.:|.|.|:|.:...|::.|..:|.|:..|.  
  Fly   127 EVTLMTKATLKYTGEVFWEPPAIYKSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIP 191

  Fly   199 -------GVTLNPELKLLQYNLGQPLEL--EESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTF 254
                   |:.|......:::::   ||:  .:::.|.|:.:..||.:|......|:...:.:...
  Fly   192 GSNLVQVGIDLTEFYLSVEWDI---LEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTVNLI 253

  Fly   255 APSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMF--TGADIPPVAY-VKALDLWMAGCML 316
            .|...:..|:...|:|..|: ..:|||.::.:::|...|  ....|||.:. |..|..::...|:
  Fly   254 VPCVALTFLTVLVFYLPSDS-GEKVTLCISILVSLTVFFLLLAEIIPPTSLAVPLLGKYLLFTMI 317

  Fly   317 SVFAALAEFVVVKVLDVQYQYQ-------------VNRIPKVLPMR 349
            .|  :|:.:..|.||::.::..             ::.:||::.||
  Fly   318 LV--SLSVWTTVCVLNIHFRSPSTHNMSPLVRKLFLHFMPKLMMMR 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 81/371 (22%)
nAChRbeta2NP_524483.1 LIC 9..479 CDD:273305 81/371 (22%)
LGIC_ECD_nAChR_proto_alpha-like 29..247 CDD:349832 49/232 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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