DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and nAChRalpha1

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001262916.1 Gene:nAChRalpha1 / 42918 FlyBaseID:FBgn0000036 Length:597 Species:Drosophila melanogaster


Alignment Length:338 Identity:71/338 - (21%)
Similarity:134/338 - (39%) Gaps:53/338 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 NYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDY 107
            ||.:.|||.......:.|...:.:..:..:|:::.....::::.|.|.:.:|:      ...|||
  Fly    35 NYNRLIRPVGNNSDRLTVKMGLRLSQLIDVNLKNQIMTTNVWVEQEWNDYKLK------WNPDDY 93

  Fly   108 --VTLLPEVFENFWQPDPYFLNS-------KIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIAC 163
              |..|....|:.|.||....|:       .|...|.|.|  |...::|...: |.:      .|
  Fly    94 GGVDTLHVPSEHIWLPDIVLYNNADGNYEVTIMTKAILHH--TGKVVWKPPAI-YKS------FC 149

  Fly   164 QMEFQLYPMDIQVCPIYIESFSSNNQKVKLR----WSDSGVTLNPELKLLQYNLGQPLELEESDG 224
            :::.:.:|.|.|.|.:...|::.:...|.||    .:||. .:...:.|..|.:....::.....
  Fly   150 EIDVEYFPFDEQTCFMKFGSWTYDGYMVDLRHLKQTADSD-NIEVGIDLQDYYISVEWDIMRVPA 213

  Fly   225 YMPEKVGNFSR---LTVYFR--FERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVT 284
            ...||..:...   |.:.|.  ..|:...:.:....|...:..||...|:|..|: ..:::|.::
  Fly   214 VRNEKFYSCCEEPYLDIVFNLTLRRKTLFYTVNLIIPCVGISFLSVLVFYLPSDS-GEKISLCIS 277

  Fly   285 CMLTLVTMF--TGADIPPVAY-VKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNR----- 341
            .:|:|...|  ....|||.:. |..|..::...|:.|  .|:..|.:.||:|.::..|..     
  Fly   278 ILLSLTVFFLLLAEIIPPTSLTVPLLGKYLLFTMMLV--TLSVVVTIAVLNVNFRSPVTHRMAPW 340

  Fly   342 --------IPKVL 346
                    :||:|
  Fly   341 VQRLFIQILPKLL 353

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 71/338 (21%)
nAChRalpha1NP_001262916.1 Neur_chan_LBD 25..240 CDD:280998 45/220 (20%)
LIC 27..530 CDD:273305 71/338 (21%)
Neur_chan_memb 247..530 CDD:280999 26/110 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR18945
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
11.100

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