DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and pHCl-1

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001261898.1 Gene:pHCl-1 / 39730 FlyBaseID:FBgn0264908 Length:978 Species:Drosophila melanogaster


Alignment Length:383 Identity:96/383 - (25%)
Similarity:176/383 - (45%) Gaps:29/383 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 RPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDYVTLLPE 113
            |.|..:|: :.|:.::.::.:.|.:...:.:.|:..::|:|.:.||:..:   :...|::..|..
  Fly   379 RRPHNRGT-LTVNVNVLLLSLASPDESSLKYEVEFLLNQQWNDPRLQYGN---KSHYDFLNALHH 439

  Fly   114 VFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCP 178
             .::.|.||.||:.....:...:...| ::.:::|.|:.||.|.|.|::||....::|.|...|.
  Fly   440 -HDSIWTPDTYFIMHGDFKDPIIPMHF-ALRIFRNGTITYAMRRHLILSCQGSLHIFPFDDPKCS 502

  Fly   179 IYIESFSSNNQKVKLRWSDSGVTL--NPELKLLQYNL--GQPLELEESDGYMPEKVGNFSRLTVY 239
            ..:||.|....::|..|.:...||  :|.|..|...|  .|....:::...     ||:|.|.|.
  Fly   503 FSMESISYEEAQIKYVWKNDEDTLRKSPSLTTLNAYLIKNQTTACDQNSWR-----GNYSCLQVE 562

  Fly   240 FRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTG--ADIPPVA 302
            ..|.|...::....|.|..::|..|:.:|||..:|:|.||.:.||.||...|...|  :.:|.|:
  Fly   563 LTFTRDRAYYFTTVFIPGIILVTSSFITFWLEWNAVPARVMIGVTTMLNFFTTSNGFRSTLPVVS 627

  Fly   303 YVKALDLWMAGCMLSVFAALAEFVVVKVL-------DVQYQYQVNRIPKVLPMRISNMEKGQCAT 360
            .:.|:::|...||..::|:|.|||.|..:       :|.|:...|.:.:.||..:|.:.....:.
  Fly   628 NLTAMNVWDGVCMCFIYASLLEFVCVNYVGRKRPLHNVVYRPGENPVTQRLPAVLSRIGVILASP 692

  Fly   361 VASWEGGAVRSRKATQTPT---TPGQTSLQGNGGPPKPARRQSLL--SVAWTDTDTGV 413
            :||.......|.....||.   ||..:|.....|.|:....:...  .:.|.:...|:
  Fly   693 LASAAATPAMSMMGGATPMSSGTPAASSSVATPGTPRITDPEEFFGGGMRWQEAHGGI 750

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 96/383 (25%)
pHCl-1NP_001261898.1 LIC 339..>662 CDD:455710 78/293 (27%)
LGIC_TM <948..975 CDD:476813
TM4 helix 950..971 CDD:349850
Blue background indicates that the domain is not in the aligned region.

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