DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and Glra4

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001178843.1 Gene:Glra4 / 367912 RGDID:1564103 Length:456 Species:Rattus norvegicus


Alignment Length:473 Identity:151/473 - (31%)
Similarity:230/473 - (48%) Gaps:85/473 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FILMW------LSEATEAHMNYTAKPRVVLP--------------PNYVKEIRPPSKKGSPVIVD 61
            |:|:|      |.....|..:..:.|:...|              ..|...|| |:.||.||.|.
  Rat    10 FLLLWTLPGKVLLSVALAKEDVKSGPKGSQPMSPSDFLDKLMGRTSGYDARIR-PNFKGPPVNVT 73

  Fly    62 FSIFVVDINSINVEDMDFRVDMFIHQRWLESRL---EIPDDIFEEGDDYVTLLPEVFENFWQPDP 123
            .:||:....|:....||:||::|:.|:|.:.||   |.|||..:       |.|.:.::.|:||.
  Rat    74 CNIFINSFGSVTETTMDYRVNVFLRQQWNDPRLAYREYPDDSLD-------LDPSMLDSIWKPDL 131

  Fly   124 YFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNN 188
            :|.|.|.|....:|.....:.::||..|.|:.|:..|::|.|:.:.:|||||.|.:.:|||....
  Rat   132 FFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTM 196

  Fly   189 QKVKLRWSDS--GVTLNPELKLLQYNLGQPLELEESDGYMPE--KVGNFSRLTVYFRFERQIGHH 249
            ..:...|.:.  .|.:...|.|.|:.|....:|    ||..:  ..|.|:.:.|.|..|||:|::
  Rat   197 NDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDL----GYCTKHYNTGKFTCIEVKFHLERQMGYY 257

  Fly   250 LIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTG--ADIPPVAYVKALDLWMA 312
            |||.:.||.|:|:|||.|||:.:||.|.||.|.:|.:||:.|..:|  |.:|.|:||||:|:|||
  Rat   258 LIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMA 322

  Fly   313 GCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEK---------------GQCATVA 362
            .|:|.|||||.|:..|..:..|:: :..|:.:  ..|..:||:               |.|  :.
  Rat   323 VCLLFVFAALLEYAAVNFVSRQHK-EFMRLRR--KQRRRHMEEDIIREGRFYFRGYGLGHC--LQ 382

  Fly   363 SWEGGAVR--SRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTGVEKIMWREIDKVS 425
            :.:||.:.  |..:.|.|||                    ||....|.....|::.  :.||.:|
  Rat   383 ARDGGPMEGSSIYSPQPPTT--------------------LLKEGETMRKVYVDRA--KRIDTIS 425

  Fly   426 RAVFPILFFVFVLLYWPI 443
            |||||..|.||.:.||.:
  Rat   426 RAVFPFTFLVFNIFYWVV 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 149/469 (32%)
Glra4NP_001178843.1 LIC 9..444 CDD:273305 151/473 (32%)

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