DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG12344 and Glra4

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001178843.1 Gene:Glra4 / 367912 RGDID:1564103 Length:456 Species:Rattus norvegicus


Alignment Length:473 Identity:151/473 - (31%)
Similarity:230/473 - (48%) Gaps:85/473 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 FILMW------LSEATEAHMNYTAKPRVVLP--------------PNYVKEIRPPSKKGSPVIVD 61
            |:|:|      |.....|..:..:.|:...|              ..|...|| |:.||.||.|.
  Rat    10 FLLLWTLPGKVLLSVALAKEDVKSGPKGSQPMSPSDFLDKLMGRTSGYDARIR-PNFKGPPVNVT 73

  Fly    62 FSIFVVDINSINVEDMDFRVDMFIHQRWLESRL---EIPDDIFEEGDDYVTLLPEVFENFWQPDP 123
            .:||:....|:....||:||::|:.|:|.:.||   |.|||..:       |.|.:.::.|:||.
  Rat    74 CNIFINSFGSVTETTMDYRVNVFLRQQWNDPRLAYREYPDDSLD-------LDPSMLDSIWKPDL 131

  Fly   124 YFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNN 188
            :|.|.|.|....:|.....:.::||..|.|:.|:..|::|.|:.:.:|||||.|.:.:|||....
  Rat   132 FFANEKGANFHEVTTDNKLLRIFKNGNVLYSIRLTLILSCPMDLKNFPMDIQTCTMQLESFGYTM 196

  Fly   189 QKVKLRWSDS--GVTLNPELKLLQYNLGQPLELEESDGYMPE--KVGNFSRLTVYFRFERQIGHH 249
            ..:...|.:.  .|.:...|.|.|:.|....:|    ||..:  ..|.|:.:.|.|..|||:|::
  Rat   197 NDLMFEWLEDAPAVQVAEGLTLPQFILRDEKDL----GYCTKHYNTGKFTCIEVKFHLERQMGYY 257

  Fly   250 LIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTG--ADIPPVAYVKALDLWMA 312
            |||.:.||.|:|:|||.|||:.:||.|.||.|.:|.:||:.|..:|  |.:|.|:||||:|:|||
  Rat   258 LIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKVSYVKAIDIWMA 322

  Fly   313 GCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEK---------------GQCATVA 362
            .|:|.|||||.|:..|..:..|:: :..|:.:  ..|..:||:               |.|  :.
  Rat   323 VCLLFVFAALLEYAAVNFVSRQHK-EFMRLRR--KQRRRHMEEDIIREGRFYFRGYGLGHC--LQ 382

  Fly   363 SWEGGAVR--SRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTGVEKIMWREIDKVS 425
            :.:||.:.  |..:.|.|||                    ||....|.....|::.  :.||.:|
  Rat   383 ARDGGPMEGSSIYSPQPPTT--------------------LLKEGETMRKVYVDRA--KRIDTIS 425

  Fly   426 RAVFPILFFVFVLLYWPI 443
            |||||..|.||.:.||.:
  Rat   426 RAVFPFTFLVFNIFYWVV 443

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 149/469 (32%)
Glra4NP_001178843.1 LIC 9..444 CDD:273305 151/473 (32%)
Neur_chan_LBD 47..254 CDD:280998 67/218 (31%)
Neur_chan_memb 261..441 CDD:280999 70/206 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR18945
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
33.000

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