DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and gabrb2a

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_001019558.2 Gene:gabrb2a / 336252 ZFINID:ZDB-GENE-030131-8196 Length:519 Species:Danio rerio


Alignment Length:482 Identity:127/482 - (26%)
Similarity:217/482 - (45%) Gaps:110/482 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 PSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRL---EIPDDIFEEGDDYVTLLP 112
            |...|:||.|..:|.:..|:.::..:||:.:.|:..|.|.:.||   |||.::        ||..
Zfish    52 PDFGGAPVAVGMNIDIASIDMVSEVNMDYTLTMYFQQAWRDKRLSYSEIPLNL--------TLDN 108

  Fly   113 EVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQLYPMDIQVC 177
            .|.:..|.||.||||.|.:.:..:|.|...:.|:.:.||.|..|:....||.|:.:.||:|.|.|
Zfish   109 RVADQLWVPDTYFLNDKKSFVHGVTVKNRMIRLHPDGTVLYGLRITTTAACMMDLRRYPLDEQNC 173

  Fly   178 PIYIESFSSNNQKVKLRW--SDSGVTLNPELKLLQYNLGQPLELEESDGYMPEKVGNFSRLTVYF 240
            .:.|||:......::..|  .|..|:....::|.|:::   ::.:.....:....|::.||::.|
Zfish   174 TLEIESYGYTTDDIEFYWRGGDGAVSGVERIELPQFSI---VDYKLISKNVVFSTGSYPRLSLSF 235

  Fly   241 RFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFT--GADIPPVAY 303
            :.:|.||:.::||:.||.|:.:|||.|||:..||...||.|.:|.:||:.|:.|  ...:|.:.|
Zfish   236 KLKRNIGYFILQTYMPSILITILSWVSFWINYDASAARVALGITTVLTMTTINTHLRETLPKIPY 300

  Fly   304 VKALDLWMAGCMLSVFAALAEFVVVKVL------------------------------------- 331
            |||:|:::.||.:.||.||.|:..|..:                                     
Zfish   301 VKAIDMYLMGCFVFVFLALLEYAFVNYIFFGRGPQRQKKAAEKAATANNEKLRPDPNKWLVGSVV 365

  Fly   332 ---DVQY----QYQVN---------------------RIPKVLP--MRISNME-KGQC------- 358
               |..|    |.:::                     |: |:.|  :|::.:| |.:.       
Zfish   366 QRDDALYARMKQREIDGYDSMWDPIFAEDAALGLGDQRL-KMTPDDIRLTTVEMKNEMGPSDLSR 429

  Fly   359 ------ATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKP--ARRQSLLSVAWTD-TDTGVE 414
                  :|:.:::...::.|:|.......|.::|:.:....|.  .||.|.|.|...| :|.   
Zfish   430 GLGDPRSTMLAYDSSTLQYRRAAMARQNYGHSALERHATQKKSRLRRRASQLKVNIPDLSDV--- 491

  Fly   415 KIMWREIDKVSRAVFPILFFVFVLLYW 441
                ..|||.||.:||.||..|.::||
Zfish   492 ----NSIDKWSRMIFPTLFSFFNIVYW 514

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 125/480 (26%)
gabrb2aNP_001019558.2 LIC 7..517 CDD:273305 127/482 (26%)

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