Sequence 1: | NP_001286298.1 | Gene: | CG12344 / 36145 | FlyBaseID: | FBgn0033558 | Length: | 449 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001285015.1 | Gene: | nAChRalpha3 / 31767 | FlyBaseID: | FBgn0015519 | Length: | 795 | Species: | Drosophila melanogaster |
Alignment Length: | 436 | Identity: | 91/436 - (20%) |
---|---|---|---|
Similarity: | 174/436 - (39%) | Gaps: | 77/436 - (17%) |
- Green bases have known domain annotations that are detailed below.
Fly 11 ISFGLGFILMWLSEATEAHMNYTAKPRVV--LPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSIN 73
Fly 74 VEDMDFRVDMFIHQRWLESRLEIPDDIFEEGDDY--VTLLPEVFENFWQPDPYFLNSKIAEIATL 136
Fly 137 THKFTSVTLYKNKTVRYAARMH----AII--ACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRW 195
Fly 196 SDS---------GVTLNPELKLLQYNLGQPLELEESDGYM----PEKVGNFSRLTVYFRFERQIG 247
Fly 248 HHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMF--TGADIPPVAYVKAL--D 308
Fly 309 LWMAGCMLSVFAALAEFVVVKVLDVQYQYQ-------------VNRIPKVLPMR-----ISNMEK 355
Fly 356 -GQCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQS 400 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
CG12344 | NP_001286298.1 | LIC | 8..441 | CDD:273305 | 91/436 (21%) |
nAChRalpha3 | NP_001285015.1 | Neur_chan_LBD | 26..241 | CDD:280998 | 47/234 (20%) |
Neur_chan_memb | 248..>359 | CDD:280999 | 26/114 (23%) | ||
Neur_chan_memb | <683..760 | CDD:280999 | |||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 1 | 1.100 | - | - | P | PTHR18945 |
Phylome | 0 | 0.000 | Not matched by this tool. | |||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
1 | 1.100 |