DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12344 and Gabrd

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_058985.1 Gene:Gabrd / 29689 RGDID:61901 Length:449 Species:Rattus norvegicus


Alignment Length:424 Identity:116/424 - (27%)
Similarity:201/424 - (47%) Gaps:38/424 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEG 104
            |...|.:..| |...|.||.|..::.|..|:.|:..:|::.:.:|:||.|.:|||.     :...
  Rat    47 LMEGYARNFR-PGIGGPPVNVALALEVASIDHISEANMEYTMTVFLHQSWRDSRLS-----YNHT 105

  Fly   105 DDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQL 169
            ::.:.|.....:..|.||.:.:|:|.|....:|.:...:.|..:..:.|:.|:.:.:||.|:...
  Rat   106 NETLGLDSRFVDKLWLPDTFIVNAKSAWFHDVTVENKLIRLQPDGVILYSIRITSTVACDMDLAK 170

  Fly   170 YPMDIQVCPIYIESFSSNNQKVKLRWSDSGVTLN--PELKLLQYNLGQPLELEESDGYMPEKVGN 232
            ||||.|.|.:.:||:..:::.:...||::...::  ..|:|.|:.:.......|...:  :..|.
  Rat   171 YPMDEQECMLDLESYGYSSEDIVYYWSENQEQIHGLDRLQLAQFTITSYRFTTELMNF--KSAGQ 233

  Fly   233 FSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA- 296
            |.||:::|:..|..|.::||::.||.|:|.:||.|||:...|:|.||:|.:|.:||:.|:...| 
  Rat   234 FPRLSLHFQLRRNRGVYIIQSYMPSVLLVAMSWVSFWISQAAVPARVSLGITTVLTMTTLMVSAR 298

  Fly   297 -DIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNRIPKVLPMRISNMEKGQCAT 360
             .:|..:.:||||::...|.:.|||||.|:.... .:..|:.:.....||...| :.|:......
  Rat   299 SSLPRASAIKALDVYFWICYVFVFAALVEYAFAH-FNADYRKKRKAKVKVTKPR-AEMDVRNAIV 361

  Fly   361 VASWEGGAVR-----SRKATQTP--------TTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTG 412
            :.|.....|.     ||:..:.|        :...:...:|...|..|...:|.|..  .|.|| 
  Rat   362 LFSLSAAGVSQELAISRRQGRVPGNLMGSYRSVEVEAKKEGGSRPGGPGGIRSRLKP--IDADT- 423

  Fly   413 VEKIMWREIDKVSRAVFPILFFVFVLLYWPILLM 446
                    ||..:|||||..|....::||....|
  Rat   424 --------IDIYARAVFPAAFAAVNIIYWAAYTM 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 113/417 (27%)
GabrdNP_058985.1 LGIC_ECD 63..246 CDD:355788 47/189 (25%)
LGIC_TM 249..>337 CDD:365787 33/88 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

Return to query results.
Submit another query.