DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG12344 and GABRR1

DIOPT Version :9

Sequence 1:NP_001286298.1 Gene:CG12344 / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_002033.2 Gene:GABRR1 / 2569 HGNCID:4090 Length:479 Species:Homo sapiens


Alignment Length:509 Identity:127/509 - (24%)
Similarity:221/509 - (43%) Gaps:118/509 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 FGLGFILMW-LSEATEAHMNYTAKPRVVLPPNYVKEIRPPSKKG-----------------SPVI 59
            ||: |:|.| ...|||:.|::..           :|:...||||                 ||::
Human     9 FGI-FLLWWGWVLATESRMHWPG-----------REVHEMSKKGRPQRQRREVHEDAHKQVSPIL 61

  Fly    60 ----------------------VDFS---------------IFVVDINSINVEDMDFRVDMFIHQ 87
                                  .|||               :.|..::||:..||||.:.:::..
Human    62 RRSPDITKSPLTKSEQLLRIDDHDFSMRPGFGGPAIPVGVDVQVESLDSISEVDMDFTMTLYLRH 126

  Fly    88 RWLESRLEIPDDIFEEGDDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVR 152
            .|.:.||..|    ...:..:|....:.:..|.||.:|::||.:.|...|.....:.:..:..|.
Human   127 YWKDERLSFP----STNNLSMTFDGRLVKKIWVPDMFFVHSKRSFIHDTTTDNVMLRVQPDGKVL 187

  Fly   153 YAARMHAIIACQMEFQLYPMDIQVCPIYIESFSSNNQKVKLRW--------SDSGVTLNPELKLL 209
            |:.|:.....|.|:|..:|:|.|.|.:.|||::.....:.|.|        :|..::|: :..:.
Human   188 YSLRVTVTAMCNMDFSRFPLDTQTCSLEIESYAYTEDDLMLYWKKGNDSLKTDERISLS-QFLIQ 251

  Fly   210 QYNLGQPLELEESDGYMPEKVGNFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDA 274
            :::....|....|.|:       ::||.:.|...|.|...|:||:.|::|:|||||.|||:...|
Human   252 EFHTTTKLAFYSSTGW-------YNRLYINFTLRRHIFFFLLQTYFPATLMVMLSWVSFWIDRRA 309

  Fly   275 IPGRVTLLVTCMLTLVTMFTG--ADIPPVAYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQY 337
            :|.||.|.:|.:||:.|:.||  |.:|.|:|:||:|:::....:.||.::.|:..|..|....:.
Human   310 VPARVPLGITTVLTMSTIITGVNASMPRVSYIKAVDIYLWVSFVFVFLSVLEYAAVNYLTTVQER 374

  Fly   338 QVNRIPKVLP-----------MRISNMEKGQCATVASW--EGGAVRSRKATQTPTTPGQTSLQGN 389
            :..::.:.||           |...|...|:...:.::  |.|....|...|......::|    
Human   375 KEQKLREKLPCTSGLPPPRTAMLDGNYSDGEVNDLDNYMPENGEKPDRMMVQLTLASERSS---- 435

  Fly   390 GGPPKPARRQSLLSVAWTDTDTGVEKIMWREIDKVSRAVFPILFFVFVLLYWPI 443
              |.:.::|.|.:|:          :|....|||.||.:||..:.:|.|:||.|
Human   436 --PQRKSQRSSYVSM----------RIDTHAIDKYSRIIFPAAYILFNLIYWSI 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG12344NP_001286298.1 LIC 8..441 CDD:273305 124/505 (25%)
GABRR1NP_002033.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 32..55 5/22 (23%)
LIC 75..478 CDD:273305 111/431 (26%)
Neur_chan_LBD 76..281 CDD:280998 47/216 (22%)
Neur_chan_memb 288..475 CDD:280999 58/202 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3644
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

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