DRSC/TRiP Functional Genomics Resources

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Protein Alignment alka and GABRP

DIOPT Version :10

Sequence 1:NP_610619.2 Gene:alka / 36145 FlyBaseID:FBgn0033558 Length:449 Species:Drosophila melanogaster
Sequence 2:NP_055026.1 Gene:GABRP / 2568 HGNCID:4089 Length:440 Species:Homo sapiens


Alignment Length:436 Identity:114/436 - (26%)
Similarity:206/436 - (47%) Gaps:79/436 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 LPPNYVKEIRPPSKKGSPVIVDFSIFVVDINSINVEDMDFRVDMFIHQRWLESRLEIPDDIFEEG 104
            |...|.|.:| |:..|.||.:..::.:..|:||:..:||:...:::.|||::.||     :| ||
Human    44 LTAGYNKFLR-PNFGGEPVQIALTLDIASISSISESNMDYTATIYLRQRWMDQRL-----VF-EG 101

  Fly   105 DDYVTLLPEVFENFWQPDPYFLNSKIAEIATLTHKFTSVTLYKNKTVRYAARMHAIIACQMEFQL 169
            :...||...:.|..|.||.|.:.||.:.:..:|.....:.|:.|.||.||.|:...:||.|:...
Human   102 NKSFTLDARLVEFLWVPDTYIVESKKSFLHEVTVGNRLIRLFSNGTVLYALRITTTVACNMDLSK 166

  Fly   170 YPMDIQVCPIYIESFSSNNQKVKLRW---SDSGVTLNPELKLLQYNLGQPLELEESDGYMPEKVG 231
            ||||.|.|.:.:||:..:...|:..|   :||...|. .|:|.||.:.:...|....   .::.|
Human   167 YPMDTQTCKLQLESWGYDGNDVEFTWLRGNDSVRGLE-HLRLAQYTIERYFTLVTRS---QQETG 227

  Fly   232 NFSRLTVYFRFERQIGHHLIQTFAPSSLVVMLSWFSFWLGLDAIPGRVTLLVTCMLTLVTMFTGA 296
            |::||.:.|...|.:.:.:::|:.||:.:|:|||.|||:.||::|.|..:.||.:|::.|:..|:
Human   228 NYTRLVLQFELRRNVLYFILETYVPSTFLVVLSWVSFWISLDSVPARTCIGVTTVLSMTTLMIGS 292

  Fly   297 --DIPPV-AYVKALDLWMAGCMLSVFAALAEFVVVKVLDVQYQYQVNR--IPKVLPMRISNMEKG 356
              .:|.. .::||:|:::..|...||.||.|:.|.....:|.....:|  ..:|..:.|:|:.. 
Human   293 RTSLPNTNCFIKAIDVYLGICFSFVFGALLEYAVAHYSSLQQMAAKDRGTTKEVEEVSITNIIN- 356

  Fly   357 QCATVASWEGGAVRSRKATQTPTTPGQTSLQGNGGPPKPARRQSLLSVAWTDTDTGVE------- 414
              ::::|::                               |:.|..|:..:..:....       
Human   357 --SSISSFK-------------------------------RKISFASIEISSDNVDYSDLTMKTS 388

  Fly   415 ---KIMWRE----------------IDKVSRAVFPILFFVFVLLYW 441
               |.::||                :|..|:.:||::|.:..:.||
Human   389 DKFKFVFREKMGRIVDYFTIQNPSNVDHYSKLLFPLIFMLANVFYW 434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
alkaNP_610619.2 LIC 8..441 CDD:455710 112/434 (26%)
GABRPNP_055026.1 LIC 43..437 CDD:455710 114/436 (26%)
LGIC_ECD 60..241 CDD:475126 58/190 (31%)

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